AutoMicTools issueshttps://git.embl.de/halavaty/AutoMicTools/-/issues2023-06-02T13:39:55Zhttps://git.embl.de/halavaty/AutoMicTools/-/issues/12Imaging AF LowZoom HighZoom manual not working. check simulated2023-06-02T13:39:55ZAliaksandr HalavatyiImaging AF LowZoom HighZoom manual not working. check simulatedhttps://git.embl.de/halavaty/AutoMicTools/-/issues/11Make specifications for Configuration file2023-05-15T09:06:23ZAliaksandr HalavatyiMake specifications for Configuration file@halavaty
@rhodes
Configuration file should contain both information about specification of AutoMicTools part and microscope part (e.g. ZenBlue).
Even multiple softwares are involved, they can access the same configuration file and rea...@halavaty
@rhodes
Configuration file should contain both information about specification of AutoMicTools part and microscope part (e.g. ZenBlue).
Even multiple softwares are involved, they can access the same configuration file and read respective blocks.https://git.embl.de/halavaty/AutoMicTools/-/issues/10Error when compiling the code2022-06-29T15:50:29ZAliaksandr HalavatyiError when compiling the code@gunkel
I have now problem to compile AutoMicTools. Looks like one of the classes is not found:
https://git.embl.de/halavaty/AutoMicTools/-/blob/master/src/main/java/automic/online/microscope/MicroscopeCommanderFactory.java#L45
Do you...@gunkel
I have now problem to compile AutoMicTools. Looks like one of the classes is not found:
https://git.embl.de/halavaty/AutoMicTools/-/blob/master/src/main/java/automic/online/microscope/MicroscopeCommanderFactory.java#L45
Do you remember at which point we have added this class by chance and for which purpose? I can not recall.
If not needed, I will tend to comment or delete this line.https://git.embl.de/halavaty/AutoMicTools/-/issues/9Put example project containing Jobs and JobDistributor in Jython to Gitlab (h...2021-11-18T11:16:04ZAliaksandr HalavatyiPut example project containing Jobs and JobDistributor in Jython to Gitlab (here or separated repo)https://git.embl.de/halavaty/AutoMicTools/-/issues/8Planning major updates2021-11-24T11:14:48ZAliaksandr HalavatyiPlanning major updates# Urgent or required for potential publication
1. Clean Maven project, implement file watch such that it not requires Kota's code, implement pom-scijava as a parent.
2. Create or modify Job distributor interactively.
- GUI to add the...# Urgent or required for potential publication
1. Clean Maven project, implement file watch such that it not requires Kota's code, implement pom-scijava as a parent.
2. Create or modify Job distributor interactively.
- GUI to add the jobs
- Loading existing JobsDistributors for files (.xml?) and modifying it interactively.
- The alternative iss to have Jobdistributors as modifiable scripts.What is better (GUI or the script)????????
- Document Anniek project as an example to extend Aotomitools for a particular project.
3. Possibility to find and test all existing Jobs:
- Which GUI will be needed?
4. Think, check and clean Plugins menu structure in Fiji.
5. Inspect the possibility to build custom image analysis using Groovy (or Jython in Fiji).
----------------
1. Think of getting the code to public repositories automatically. One might need to move project to GitHub for that. Which GitHub Account should be used?
1. Clean obsolete/custom code from the Main AutoMicTools Repository.
- think of moving postacquisition part to a separate repository.
- clean obsolete autofocus jobs
! Check update site after changes are implemented
# Not urgent, extensions for future
1. Potential microscope commander for Nikon.
2. For the microscopes, which allow flexible communication, Try to get one configuration dialogue (and/or configuration file), for linking image analysis jobs and microscope jobs.https://git.embl.de/halavaty/AutoMicTools/-/issues/4Create Ilastik adaptor2020-03-11T08:04:21ZAliaksandr HalavatyiCreate Ilastik adaptorhttps://git.embl.de/halavaty/AutoMicTools/-/issues/3Browsing of the table on Mac when accessing network drive2018-12-27T08:43:15ZAliaksandr HalavatyiBrowsing of the table on Mac when accessing network driveError reported by MMK when using table in ***tissue---second-harmonic*** projectError reported by MMK when using table in ***tissue---second-harmonic*** projecthttps://git.embl.de/halavaty/AutoMicTools/-/issues/2ParameterCollection and supporting classes requre extension and updates2017-08-13T10:02:47ZAliaksandr HalavatyiParameterCollection and supporting classes requre extension and updates## Additional parameter types
- File and Folder selection
- selection from the set of options (list parameter)
- should options be strings or any arbitrary type?
- array parameter?
## XML reader and writer for ParameterCollectio...## Additional parameter types
- File and Folder selection
- selection from the set of options (list parameter)
- should options be strings or any arbitrary type?
- array parameter?
## XML reader and writer for ParameterCollection
## GUI support:
- auto-generate GUI panel element for each ParameterCollection item
- make a function getParameterPanelCollection
- ?make some parameters invisible in GUI by defining GUI visibility tag for each parameter
## Create usage examplesAliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/halavaty/AutoMicTools/-/issues/1code inheritance between different projects2017-08-13T10:02:47ZAliaksandr Halavatyicode inheritance between different projectsHow to re-sue code in another maven project that is neither in maven.imagej.net nor on GitHub?How to re-sue code in another maven project that is neither in maven.imagej.net nor on GitHub?Aliaksandr HalavatyiAliaksandr Halavatyi