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# SMLM.data.analysis

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An R package to deal with data from single molecule localization microscopy.
This package provides three sets of functionalities:
  - data input: read SMLM data as point sets either from csv files or from TIFF images
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  - registration: point sets registration using different algorithms
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  - topological data analysis: compute similarity between point sets using persistent homology
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# Installation

To install this package, run (from within R):

``` R
library(devtools)
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install_git('https://git.embl.de/heriche/smlm.data.analysis')
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```

This package depends on these other packages:
  * TDA
  * foreach
  * doSNOW
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  * proxy
  * reshape2
  * pracma
  * transport
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  * ff
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To read from images, the following package is also required:
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  * EBImage (from Bioconductor)
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