Commits · 5a1a1d490001a635fd5e28919e5a1dc6dae8a00e · Bernd Klaus / stat_methods_bioinf · GitLab

13 Oct, 2017 1 commit
- included refs, did spell checking, version used for predo 17 · 5a1a1d49
  Bernd Klaus authored Oct 13, 2017
  
  5a1a1d49
29 Sep, 2017 2 commits
- added data files neccessary to run the vignettes, slight reordering of sections · 66de9b3a
  Bernd Klaus authored Sep 29, 2017
  
  66de9b3a
- extended the introduction of the data handling lab, added a section on joins and a basic R intro · af74e54f
  Bernd Klaus authored Sep 29, 2017
  
  af74e54f
28 Sep, 2017 1 commit
- polished graphics Rmarkdown a bit · 8da24947
  Bernd Klaus authored Sep 28, 2017
  
  8da24947
25 Sep, 2017 1 commit
- added MA plots section · c8c57fd8
  Bernd Klaus authored Sep 25, 2017
  
  c8c57fd8
22 Sep, 2017 2 commits
- refined LOESS section, added background on normalization · 4bd3e6ac
  Bernd Klaus authored Sep 22, 2017
  
  4bd3e6ac
- modified tSNE and MDS parts again a litte bit, added more details on perplexity · a5082e43
  Bernd Klaus authored Sep 22, 2017
  
  a5082e43
21 Sep, 2017 1 commit
- finished theoretical tSNE section, cleaned up MDS section · 4d15acfd
  Bernd Klaus authored Sep 21, 2017
  
  4d15acfd
25 Aug, 2017 2 commits
- cleaned up terminology confusion in MDS section, added ref to Buja 2007 · 4615adb1
  Bernd Klaus authored Aug 25, 2017
  
  4615adb1
- started t-sne section, modified scaling section to focus on Kruskal's scaling · 99e13b18
  Bernd Klaus authored Aug 25, 2017
  
  99e13b18
24 Aug, 2017 3 commits
- finished MDS section, t-SNE is next · fbf37dea
  Bernd Klaus authored Aug 24, 2017
  
  fbf37dea
- finished data cleaning and heatmap / clustering section · 99d19446
  Bernd Klaus authored Aug 24, 2017
  
  99d19446
- added heatmap and data cleaning · 1d4b4371
  Bernd Klaus authored Aug 24, 2017
  
  1d4b4371
23 Aug, 2017 2 commits
- finished PCA part, started clustering, TODO: MDS and tsne · 88125faa
  Bernd Klaus authored Aug 23, 2017
  
  88125faa
- finished var transform section, now on to dim reduction and clustering · 249a86bd
  Bernd Klaus authored Aug 23, 2017
  
  249a86bd
18 Aug, 2017 3 commits
- introduced NB, mention DESeq2 var stab capabilities · efda91cc
  Bernd Klaus authored Aug 18, 2017
  
  efda91cc
- started section on var stabilization · c2e9e1ac
  Bernd Klaus authored Aug 18, 2017
  
  c2e9e1ac
- finished size factor section · 9386b0c8
  Bernd Klaus authored Aug 18, 2017
  
  9386b0c8
17 Aug, 2017 2 commits
- finalized samples plot · 0fad9a56
  Bernd Klaus authored Aug 17, 2017
  
  0fad9a56
- added final version of the sample boxplot · 72aecb63
  Bernd Klaus authored Aug 17, 2017
  
  72aecb63
16 Aug, 2017 2 commits
- added boxplot for raw counts · 18746b2a
  Bernd Klaus authored Aug 16, 2017
  
  18746b2a
- added bulk RNA-Seq example data · a3f4143f
  Bernd Klaus authored Aug 16, 2017
  
  a3f4143f
15 Aug, 2017 1 commit
- added LOESS example and outline for the normalization section · 92831134
  Bernd Klaus authored Aug 15, 2017
  
  92831134
11 Aug, 2017 5 commits
- added regression section, TODO: LOESS, PCA, Clustering, Heatmap · 2acedcef
  Bernd Klaus authored Aug 11, 2017
  
  2acedcef
- finished scatterplot example, now on to regression · 2994d0ab
  Bernd Klaus authored Aug 11, 2017
  
  2994d0ab
- added ggplot2 scatterplot and data wrangling for sc counts and annotation · 7aa47425
  Bernd Klaus authored Aug 11, 2017
  
  7aa47425
- added TODOs to the data handling document, sc data import section for graphics document · 6314585b
  Bernd Klaus authored Aug 11, 2017
  
  6314585b
- added TODOs to the data handling document, sc data import section for graphics document · c610234e
  Bernd Klaus authored Aug 11, 2017
  
  c610234e
10 Aug, 2017 4 commits
- deleted previous .Rmd file, added new one that contains the complete data handling part · 9e125bb3
  Bernd Klaus authored Aug 10, 2017
  
  9e125bb3
- deleted stats_methods_bioinf.Rmd as content was transferred in the previous commit · fd5926f0
  Bernd Klaus authored Aug 10, 2017
  
  fd5926f0
- finished data handling part, factored it out into a new .Rmd file · d0054e2f
  Bernd Klaus authored Aug 10, 2017
  
  d0054e2f
- finished dplyr verbs section, now working on split-apply-combine · d2442bc7
  Bernd Klaus authored Aug 10, 2017
  
  d2442bc7
09 Aug, 2017 1 commit
- added widenend sc qc table and explained tidyr · b1531b7e
  Bernd Klaus authored Aug 09, 2017
  
  b1531b7e
08 Aug, 2017 2 commits
- added data import, and discussion of tidy data as well as long and wide tables · 09b71ac8
  Bernd Klaus authored Aug 08, 2017
  
  09b71ac8
- Initial commit · ac03bf58
  Bernd Klaus authored Aug 08, 2017
  
  ac03bf58