Commits · master · Bernd Klaus / stat_methods_bioinf

17 Apr, 2018 1 commit
- added map of Europe to MDS section, small fixes for April 18 · 649c766f
  Bernd Klaus authored Apr 17, 2018
  
  649c766f
16 Apr, 2018 1 commit
- modifications and updates for the April 18 course · 5640d9ca
  Bernd Klaus authored Apr 16, 2018
  
  5640d9ca
13 Apr, 2018 1 commit
- fixed wrong code in the table combination section, changed highlighting to tango · e0880027
  Bernd Klaus authored Apr 13, 2018
  
  e0880027
31 Jan, 2018 1 commit
- added keras / neural network example to the ML analysis · 517b7002
  Bernd Klaus authored Jan 31, 2018
  
  517b7002
23 Jan, 2018 3 commits
- small edits to the testing etc. lab · 5d90876f
  Bernd Klaus authored Jan 23, 2018
  
  5d90876f
- added some more info on scatterplot smoothers, fixed some hickups in the graphics part · b8384062
  Bernd Klaus authored Jan 23, 2018
  
  b8384062
- added a grouped mutate operation as an alternative to the join · bc432e8c
  Bernd Klaus authored Jan 23, 2018
  
  bc432e8c
11 Dec, 2017 2 commits
- added additional missing data sets · a54244ea
  Bernd Klaus authored Dec 11, 2017
  
  a54244ea
- first final version with slides, corrected severe fac ana bug (variance based... · 1ba0a426
  Bernd Klaus authored Dec 11, 2017
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first final version with slides, corrected severe fac ana bug (variance based selection on samples not genes)
```
  1ba0a426
06 Dec, 2017 1 commit
- first final version, without slides · bc325de9
  Bernd Klaus authored Dec 06, 2017
  
  bc325de9
04 Dec, 2017 1 commit
- finished zinbawave part, started to look a sc clustering · 80c7cb31
  Bernd Klaus authored Dec 04, 2017
  
  80c7cb31
29 Nov, 2017 1 commit
- finished factor analysis section, started zinba wave · 4d3fb36e
  Bernd Klaus authored Nov 29, 2017
  
  4d3fb36e
22 Nov, 2017 2 commits
- added first section on factor analysis · 9e73bbed
  Bernd Klaus authored Nov 22, 2017
  
  9e73bbed
- finished multiple testing section · a71e4242
  Bernd Klaus authored Nov 22, 2017
  
  a71e4242
19 Oct, 2017 1 commit
- added R script to install all packages · 42c44da3
  Bernd Klaus authored Oct 19, 2017
  
  42c44da3
13 Oct, 2017 1 commit
- included refs, did spell checking, version used for predo 17 · 5a1a1d49
  Bernd Klaus authored Oct 13, 2017
  
  5a1a1d49
29 Sep, 2017 2 commits
- added data files neccessary to run the vignettes, slight reordering of sections · 66de9b3a
  Bernd Klaus authored Sep 29, 2017
  
  66de9b3a
- extended the introduction of the data handling lab, added a section on joins and a basic R intro · af74e54f
  Bernd Klaus authored Sep 29, 2017
  
  af74e54f
28 Sep, 2017 1 commit
- polished graphics Rmarkdown a bit · 8da24947
  Bernd Klaus authored Sep 28, 2017
  
  8da24947
25 Sep, 2017 1 commit
- added MA plots section · c8c57fd8
  Bernd Klaus authored Sep 25, 2017
  
  c8c57fd8
22 Sep, 2017 2 commits
- refined LOESS section, added background on normalization · 4bd3e6ac
  Bernd Klaus authored Sep 22, 2017
  
  4bd3e6ac
- modified tSNE and MDS parts again a litte bit, added more details on perplexity · a5082e43
  Bernd Klaus authored Sep 22, 2017
  
  a5082e43
21 Sep, 2017 1 commit
- finished theoretical tSNE section, cleaned up MDS section · 4d15acfd
  Bernd Klaus authored Sep 21, 2017
  
  4d15acfd
25 Aug, 2017 2 commits
- cleaned up terminology confusion in MDS section, added ref to Buja 2007 · 4615adb1
  Bernd Klaus authored Aug 25, 2017
  
  4615adb1
- started t-sne section, modified scaling section to focus on Kruskal's scaling · 99e13b18
  Bernd Klaus authored Aug 25, 2017
  
  99e13b18
24 Aug, 2017 3 commits
- finished MDS section, t-SNE is next · fbf37dea
  Bernd Klaus authored Aug 24, 2017
  
  fbf37dea
- finished data cleaning and heatmap / clustering section · 99d19446
  Bernd Klaus authored Aug 24, 2017
  
  99d19446
- added heatmap and data cleaning · 1d4b4371
  Bernd Klaus authored Aug 24, 2017
  
  1d4b4371
23 Aug, 2017 2 commits
- finished PCA part, started clustering, TODO: MDS and tsne · 88125faa
  Bernd Klaus authored Aug 23, 2017
  
  88125faa
- finished var transform section, now on to dim reduction and clustering · 249a86bd
  Bernd Klaus authored Aug 23, 2017
  
  249a86bd
18 Aug, 2017 3 commits
- introduced NB, mention DESeq2 var stab capabilities · efda91cc
  Bernd Klaus authored Aug 18, 2017
  
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- started section on var stabilization · c2e9e1ac
  Bernd Klaus authored Aug 18, 2017
  
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- finished size factor section · 9386b0c8
  Bernd Klaus authored Aug 18, 2017
  
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17 Aug, 2017 2 commits
- finalized samples plot · 0fad9a56
  Bernd Klaus authored Aug 17, 2017
  
  0fad9a56
- added final version of the sample boxplot · 72aecb63
  Bernd Klaus authored Aug 17, 2017
  
  72aecb63
16 Aug, 2017 2 commits
- added boxplot for raw counts · 18746b2a
  Bernd Klaus authored Aug 16, 2017
  
  18746b2a
- added bulk RNA-Seq example data · a3f4143f
  Bernd Klaus authored Aug 16, 2017
  
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15 Aug, 2017 1 commit
- added LOESS example and outline for the normalization section · 92831134
  Bernd Klaus authored Aug 15, 2017
  
  92831134
11 Aug, 2017 2 commits
- added regression section, TODO: LOESS, PCA, Clustering, Heatmap · 2acedcef
  Bernd Klaus authored Aug 11, 2017
  
  2acedcef
- finished scatterplot example, now on to regression · 2994d0ab
  Bernd Klaus authored Aug 11, 2017
  
  2994d0ab