README.txt 1.05 KB
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Repository of Conda configuration files, code and manual for Assembline

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This is just a dump of the code from our local development repositories, 
which include unittests and newest developments. 
If you wish to contribute and access those repositories please contact: Jan Kosinski jan.kosinski@embl.de
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Conda building instructions for developers:

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module load Anaconda3/2020.07
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module load git

conda create --name condaBuild
source activate condaBuild
conda install conda-build

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conda-build --py 3.8 --py 3.9 --py 3.10 .
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anaconda login
anaconda upload /g/kosinski/kosinski/conda-bld/linux-64/assembline-0.99-py38_0.tar.bz2 --force
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conda convert -f --platform osx-64 /g/kosinski/kosinski/conda-bld/linux-64/assembline-0.99-py38_0.tar.bz2 -o /g/kosinski/kosinski/conda-bld
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anaconda upload /g/kosinski/kosinski/conda-bld/osx-64/assembline-0.99-py38_0.tar.bz2 --force
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#test
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conda create --name Assembline
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#install dependencies according to the instructions in the manual
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module load Chimera
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source activate Assembline
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conda install -c kosinskilab assembline --force-reinstall