Update bioimage-analysis-best-practice.md

bioimage-analysis-best-practice.md

@@ -32,17 +32,17 @@ properly handle all the phentotypes that can occur in your experiment.
 ## Mind your image acquisition modalities
 
 Changing your image acquisition modalities (e.g. changing magnification) will almost certainly cause your image analysis to fail.
-Thus, keep good track of for which input data your analysis pipeline was made for. For example, below file and folder structure is useful:
+Thus, you must know for which input data your analysis pipeline was made. To ensure this, it is strongly 
+recommended to keep your analysis_pipeline_file together with other important information as shown below:
 
 - analysis_folder
     - analysis_pipeline_file
-    - acquisition_settings_text_file
-    - example_data_input_folder
-        - negative_control_example_file
-        - positive_control_example_file
-    - example_data_results_folder
+    - image_acquisition_settings_text_file
+    - example_input_data_folder
+        - negative_control_example_image_file
+        - positive_control_example_image_file
+    - example_results_folder
         - results_file(s)  
-your analysis pipelineand also keep a 
 
 ## Report image analysis accuracy in talks and publications