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Dominik Kutra
embl-cba
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0bd3275a
Commit
0bd3275a
authored
Mar 19, 2020
by
Christian Tischer
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Update bioimage-analysis-best-practice.md
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bioimage-analysis-best-practice.md
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@@ -32,17 +32,17 @@ properly handle all the phentotypes that can occur in your experiment.
## Mind your image acquisition modalities
Changing your image acquisition modalities (e.g. changing magnification) will almost certainly cause your image analysis to fail.
Thus, keep good track of for which input data your analysis pipeline was made for. For example, below file and folder structure is useful:
Thus, you must know for which input data your analysis pipeline was made. To ensure this, it is strongly
recommended to keep your analysis_pipeline_file together with other important information as shown below:
-
analysis_folder
-
analysis_pipeline_file
-
acquisition_settings_text_file
-
example_
data_
input_folder
-
negative_control_example_file
-
positive_control_example_file
-
example_
data_
results_folder
-
image_
acquisition_settings_text_file
-
example_input
_data
_folder
-
negative_control_example_
image_
file
-
positive_control_example_
image_
file
-
example_results_folder
-
results_file(s)
your analysis pipelineand also keep a
## Report image analysis accuracy in talks and publications
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