From 87b0f905a121a1a2087aa5293308460a8ad19465 Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Sat, 22 Jul 2023 13:47:00 +0200
Subject: [PATCH] Release v0.5.0
---
.github/workflows/package.yml | 8 ++++----
CHANGELOG.md | 13 ++++++++++++-
pyfastani/__init__.py | 2 +-
setup.cfg | 1 +
4 files changed, 18 insertions(+), 6 deletions(-)
diff --git a/.github/workflows/package.yml b/.github/workflows/package.yml
index ee2936a..afa9e93 100644
--- a/.github/workflows/package.yml
+++ b/.github/workflows/package.yml
@@ -39,7 +39,7 @@ jobs:
CIBW_BUILD_VERBOSITY: 2
CIBW_BEFORE_BUILD: pip install cython
CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
- CIBW_TEST_REQUIRES: importlib-resources biopython scikit-bio
+ CIBW_TEST_REQUIRES: importlib-resources biopython
with:
output-dir: dist
- uses: actions/upload-artifact@v3
@@ -78,7 +78,7 @@ jobs:
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
- CIBW_TEST_REQUIRES: importlib-resources biopython scikit-bio
+ CIBW_TEST_REQUIRES: importlib-resources biopython
with:
output-dir: dist
- uses: actions/upload-artifact@v3
@@ -117,7 +117,7 @@ jobs:
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
- CIBW_TEST_REQUIRES: importlib-resources biopython scikit-bio
+ CIBW_TEST_REQUIRES: importlib-resources biopython
with:
output-dir: dist
- uses: actions/upload-artifact@v3
@@ -152,7 +152,7 @@ jobs:
CIBW_BEFORE_BUILD: pip install cython
CIBW_BUILD_VERBOSITY: 2
CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
- CIBW_TEST_REQUIRES: importlib-resources biopython scikit-bio
+ CIBW_TEST_REQUIRES: importlib-resources biopython
with:
output-dir: dist
- uses: actions/upload-artifact@v3
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2af56b2..ce5299c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,7 +6,18 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyfastani/compare/v0.4.1...HEAD
+[Unreleased]: https://github.com/althonos/pyfastani/compare/v0.5.0...HEAD
+
+
+## [v0.5.0] - 2023-07-22
+[v0.5.0]: https://github.com/althonos/pyfastani/compare/v0.4.1...v0.5.0
+
+### Changed
+- Bump Cython dependency to `v3.0`.
+
+### Fixed
+- Add missing signature of `Sketch.index` to type stubs.
+- PyPy builds failing on missing `PyInterpreterState_GetID` function.
## [v0.4.1] - 2022-08-20
diff --git a/pyfastani/__init__.py b/pyfastani/__init__.py
index f92fc46..7bb5835 100644
--- a/pyfastani/__init__.py
+++ b/pyfastani/__init__.py
@@ -12,7 +12,7 @@ from ._fastani import (
__author__ = "Martin Larralde <martin.larralde@embl.de>"
__license__ = "MIT"
-__version__ = "0.4.1"
+__version__ = "0.5.0"
__doc__ = _fastani.__doc__
__all__ = [
diff --git a/setup.cfg b/setup.cfg
index e5af16e..2754d6b 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -27,6 +27,7 @@ classifier =
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
+ Programming Language :: Python :: 3.11
Programming Language :: Python :: Implementation :: CPython
Programming Language :: Python :: Implementation :: PyPy
Topic :: Scientific/Engineering :: Bio-Informatics
--
GitLab