diff --git a/benches/mapping/bench.py b/benches/mapping/bench.py index a9995add33ffd392a3fa64331161c29a10d99329..1c239c019df88182171d5c360abc6c52c1d21937 100644 --- a/benches/mapping/bench.py +++ b/benches/mapping/bench.py @@ -8,7 +8,7 @@ import sys import warnings from itertools import islice -sys.path.insert(0, os.path.realpath(os.path.join(__file__, "..", ".."))) +sys.path.insert(0, os.path.realpath(os.path.join(__file__, "..", "..", ".."))) import Bio.SeqIO import numpy @@ -25,7 +25,7 @@ args = parser.parse_args() genomes = [ list(Bio.SeqIO.parse(filename, "fasta")) - for filename in (glob.glob("data/*.fna") + glob.glob("vendor/FastANI/data/*.fna")) + for filename in glob.glob(os.path.join(args.data, "*.fna")) ] with rich.progress.Progress(transient=True) as progress: