From f96e70511d1e8fc9cdb6aa626524e11d1b9f6e9d Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Thu, 4 Aug 2022 00:42:27 +0200
Subject: [PATCH] Fix missing include path in `setup.py` for building against
`cpu_features`
---
setup.cfg | 2 +-
setup.py | 8 +++++++-
2 files changed, 8 insertions(+), 2 deletions(-)
diff --git a/setup.cfg b/setup.cfg
index b9c45fb..6a958b2 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -42,7 +42,7 @@ project_urls =
[options]
zip_safe = false
-packages = pyfastani, pyfastani.tests
+packages = pyfastani, pyfastani.tests, pyfastani.tests.data
python_requires = >=3.6
test_suite = pyfastani.tests
include_package_data = true
diff --git a/setup.py b/setup.py
index 78aec70..10d7b9d 100644
--- a/setup.py
+++ b/setup.py
@@ -526,6 +526,7 @@ extensions = [
include_dirs=[
"include",
"pyfastani",
+ os.path.join("vendor", "cpu_features", "include"),
os.path.join("vendor", "boost-math", "include"),
os.path.join("pyfastani", "_sequtils"),
],
@@ -539,7 +540,12 @@ extensions = [
Extension(
"pyfastani._fasta",
[os.path.join("pyfastani", "_fasta.pyx")],
- include_dirs=["include", "pyfastani", os.path.join("pyfastani", "simd")],
+ include_dirs=[
+ "include",
+ "pyfastani",
+ os.path.join("vendor", "cpu_features", "include"),
+ os.path.join("pyfastani", "simd")
+ ],
language="c",
libraries=["sequtils"],
)
--
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