From fb18bcfeff89dfeae8adf9f562f36988f5580fba Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Fri, 22 Jul 2022 13:15:38 +0200
Subject: [PATCH] Fix include guards in `sequtils.cpp` to compile for Arm
platforms
---
pyfastani/_sequtils/sequtils.cpp | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/pyfastani/_sequtils/sequtils.cpp b/pyfastani/_sequtils/sequtils.cpp
index a08c7da..1946c0c 100644
--- a/pyfastani/_sequtils/sequtils.cpp
+++ b/pyfastani/_sequtils/sequtils.cpp
@@ -41,19 +41,25 @@ extern "C" {
void copy_upper(char* dst, const char* src, size_t len) {
#ifdef __arm__
+ #ifdef NEON_BUILD_SUPPORTED
if (features.neon)
return neon_copy_upper(dst, src, len);
else
#endif
+ #endif
#ifdef __aarch64__
+ #ifdef NEON_BUILD_SUPPORTED
if (features.neon)
return neon_copy_upper(dst, src, len);
else
#endif
+ #endif
#if defined(__x86__) || defined(__x86_64__)
+ #ifdef SSE2_BUILD_SUPPORTED
if (features.sse2)
return sse2_copy_upper(dst, src, len); // fast copying plus upper.
else
+ #endif
#endif
return default_copy_upper(dst, src, len);
}
@@ -76,9 +82,11 @@ extern "C" {
void reverse_complement(char* dst, const char* src, size_t len) {
#if defined(__x86__) || defined(__x86_64__)
+ #ifdef SSSE3_BUILD_SUPPORTED
if (features.ssse3)
return ssse3_reverse_complement(dst, src, len); // fast reverse complement.
else
+ #endif
#endif
return default_reverse_complement(dst, src, len);
}
--
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