From a13e32aa71967e80d972dadaec62aa5140bff68e Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Tue, 8 Oct 2024 15:01:30 +0200
Subject: [PATCH] Fix use of deprecated `TopHits` properties in documentation
---
docs/examples/fetchmgs.ipynb | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/docs/examples/fetchmgs.ipynb b/docs/examples/fetchmgs.ipynb
index e8df382e..2ee2de00 100644
--- a/docs/examples/fetchmgs.ipynb
+++ b/docs/examples/fetchmgs.ipynb
@@ -160,7 +160,7 @@
"source": [
"results = []\n",
"for hits in pyhmmer.hmmsearch(hmms, proteins, bit_cutoffs=\"trusted\"):\n",
- " cog = hits.query_name.decode()\n",
+ " cog = hits.query.name.decode()\n",
" for hit in hits:\n",
" if hit.included:\n",
" results.append(Result(hit.name.decode(), cog, hit.score))"
--
GitLab