Commits · f1f24e1d5b8fd4a1f1e64ff7545b7f733c587f3b · Martin Larralde / pyhmmer · GitLab

01 May, 2022 2 commits
- Fix remaining small issues in documentation · f1f24e1d
  Martin Larralde authored May 01, 2022
  
  f1f24e1d
- Fix `pyhmmer.daemon` appearing twice in the API reference · 9fb0dd14
  Martin Larralde authored May 01, 2022
  
  9fb0dd14
23 Apr, 2022 2 commits
- Rename `SearchIteration` to `IterationResult` for consistency · bcbecab5
  Martin Larralde authored Apr 23, 2022
  
  bcbecab5
- Add custom class to run iterative search queries against a HMMER daemon · 317e1bd3
  Martin Larralde authored Apr 23, 2022
  
  317e1bd3
22 Apr, 2022 1 commit
- Add `plan7.IterativeSearch` and `plan7.SearchIteration` to the documentation · 0fb777d6
  Martin Larralde authored Apr 22, 2022
  
  0fb777d6
19 Apr, 2022 2 commits
- Rename `hmmpgmd` module to more intuitive `daemon` module · e8dfd296
  Martin Larralde authored Apr 20, 2022
  
  e8dfd296
- Add documentation for the `pyhmmer.hmmpgmd` module · 5f1bdf80
  Martin Larralde authored Apr 20, 2022
  
  5f1bdf80
14 Mar, 2022 1 commit
- Update documentation in preparation for next release · d067b78b
  Martin Larralde authored Mar 14, 2022
  
  d067b78b
11 Nov, 2021 1 commit
- Update documentation to include `LongTargetsPipeline` [ci skip] · e5288c2f
  Martin Larralde authored Nov 11, 2021
  
  e5288c2f
27 Sep, 2021 2 commits
- Add missing documentation for `hmmalign` function in the API docs · 8dcdc03b
  Martin Larralde authored Sep 28, 2021
  
  8dcdc03b
- Add several classes to `pyhmmer.plan7` to report tracebacks for HMM/sequence alignment · 4750558e
  Martin Larralde authored Sep 27, 2021
  
  4750558e
10 Sep, 2021 1 commit
- Make `Offsets`, `Cutoffs` and `EvalueParameters` public types of `plan7` · b5b8b2a1
  Martin Larralde authored Sep 10, 2021
  
  b5b8b2a1
08 Jun, 2021 1 commit
- Add `pyhmmer.easel.Randomness` to the API docs · 5b9a2211
  Martin Larralde authored Jun 08, 2021
  
  5b9a2211
05 Jun, 2021 1 commit
- Reorganize API documentation using subsections for each module · 237dd5c0
  Martin Larralde authored Jun 05, 2021
  
  237dd5c0
14 May, 2021 1 commit
- Update documentation to export new `Vector` and `Matrix` classes · 52721649
  Martin Larralde authored May 15, 2021
  
  52721649
10 Mar, 2021 1 commit
- Add `pyhmmer.hmmer.nhmmer` method to search nucleic sequences · b5f2e56d
  Martin Larralde authored Mar 10, 2021
  
  b5f2e56d
09 Mar, 2021 1 commit
- Improve index page in HTML documentation and update active-site example · 9e4063c2
  Martin Larralde authored Mar 09, 2021
  
  9e4063c2
20 Jan, 2021 1 commit
- Add documentation to the `pyhmmer.hmmer` method · 1763843e
  Martin Larralde authored Jan 20, 2021
  
  1763843e
25 Nov, 2020 1 commit
- Attempt fixing API reference in PDF version of the docs [ci skip] · 2e2b20a3
  Martin Larralde authored Nov 25, 2020
  
  2e2b20a3
24 Nov, 2020 1 commit
- Add missing classes to Sphinx documentation index · 07950a83
  Martin Larralde authored Nov 24, 2020
  
  07950a83
18 Nov, 2020 1 commit
- Add `TextSequence` and `DigitalSequence` to help with sequence formats · 8d3fcf66
  Martin Larralde authored Nov 18, 2020
  
  8d3fcf66
10 Nov, 2020 2 commits
- Add `pyhmmer.plan7.Alignment` class wrapping `P7_ALIDISPLAY` · fabe6a4f
  Martin Larralde authored Nov 10, 2020
  
  fabe6a4f
- Add all Cython classes to the documentation and improve some docstrings · d40fe871
  Martin Larralde authored Nov 10, 2020
  
  d40fe871
09 Nov, 2020 1 commit
- Add configuration files to build documentation with Sphinx · 21b37533
  Martin Larralde authored Nov 08, 2020
  
  21b37533