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Martin Larralde
pyrodigal
Commits
04f23d48
Commit
04f23d48
authored
Apr 20, 2022
by
Martin Larralde
Browse files
Fix remaining small issues with documentation
parent
33348bc9
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2
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docs/install.rst
View file @
04f23d48
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@@ -40,10 +40,10 @@ A package recipe for Arch Linux can be found in the Arch User Repository
under the name `python-pyrodigal <https://aur.archlinux.org/packages/python-pyrodigal>`_.
It will always match the latest release from PyPI.
Steps to install on ArchLinux depend on your `AUR helper <https://wiki.archlinux.org/title/AUR_helpers>`_
(``yaourt``, ``aura``, ``yay``, etc.).
Steps f
or ``aura``
are
:
Steps to install on ArchLinux depend on your `AUR helper <https://wiki.archlinux.org/title/AUR_helpers>`_
(``yaourt``, ``aura``, ``yay``, etc.).
F
or ``aura``
, you'll need to run
:
.. console
::
..
code::
console
$ aura -A python-pyrodigal
...
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pyrodigal/_pyrodigal.pyx
View file @
04f23d48
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@@ -15,8 +15,8 @@ Example:
... record = Bio.SeqIO.read(f, "fasta")
Then use Pyrodigal to find the genes in *metagenomic* mode (without
training first),
and then
build a map of codon frequencies for
each
gene::
training first),
for instance to
build a map of codon frequencies for
each
gene::
>>> from collections import Counter
>>> import pyrodigal
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