Commit cd5d3ef4 authored by Martin Larralde's avatar Martin Larralde
Browse files

Update `connection_scoring` benchmark to test the generic filter

parent f9640791
......@@ -43,9 +43,9 @@ for filename in tqdm.tqdm(glob.glob(os.path.join(args.data, "*.fna"))):
add_nodes(nodes, seq, tinf)
# run connection scoring
for backend in ["avx", "sse", None]:
for backend in ["avx", "sse", "generic", None]:
times = []
for run in tqdm.tqdm(range(args.runs), leave=False):
for run in tqdm.tqdm(range(args.runs), description=str(backend), leave=False):
# initialize scorer
scorer = ConnectionScorer(backend=backend)
scorer_nodes = nodes.copy()
......
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