fix bugs

confidenceMapUtil/FDRutil.py

@@ -543,6 +543,7 @@ def lowPassFilter(mapFFT, frequencyMap, cutoff, shape):
 
 		fftObject = pyfftw.builders.irfftn(filteredftMap, shape, threads = numCores);
 		filteredMap = fftObject();
+
 	except:
 		filteredMap = np.fft.irfftn(filteredftMap, shape);
 

confidenceMapUtil/confidenceMapMain.py

@@ -71,10 +71,14 @@ def calculateConfidenceMap(em_map, apix, noiseBox, testProc, ecdf, lowPassFilter
 	# plot locations of noise estimation
 	if modelMap is None:
 		pp = mapUtil.makeDiagnosticPlot(em_map, wn, False, boxCoord);
+		print(
+			"Generating diagnostic plot of noise estimation. Please have a look in 'diag_image.pdf' that the molecule does not fall into the region used for background noise estimation.");
 		pp.savefig("diag_image.pdf");
 		pp.close();
 	else:
 		pp = mapUtil.makeDiagnosticPlot(em_map, wn, True, boxCoord);
+		print(
+			"Generating diagnostic plot of noise estimation. Please have a look in 'diag_image.pdf' that the molecule does not fall into the region used for background noise estimation.");
 		pp.savefig("diag_image.pdf");
 		pp.close();
 
@@ -94,7 +98,8 @@ def calculateConfidenceMap(em_map, apix, noiseBox, testProc, ecdf, lowPassFilter
 			output = "Estimated noise statistics: mean: " + repr(mean) + " and variance: " + repr(var);
 		else:
 			output = "Using user provided noise statistics";
-			print(output);
+
+		print(output);
 
 		locFiltMap = None;
 		locScaleMap = None;

confidenceMapUtil/mapUtil.py

@@ -126,8 +126,6 @@ def makeDiagnosticPlot(map, windowSize, locscale, boxCoord):
 	#*** function to make diagnostic plot of noise estimation ****
 	#*************************************************************
 
-	print("Generating diagnostic plot of noise estimation. Please have a look in 'diag_image.pdf' that the molecule does not fall into the region used for background noise estimation.")
-
 	from matplotlib.backends.backend_pdf import PdfPages
 	import matplotlib.gridspec as gridspec