Commit c287d6ad authored by Maximilian Beckers's avatar Maximilian Beckers
Browse files

updated tutorial, no pixel size anymore as required input

parent bdfe1951
......@@ -63,6 +63,8 @@ def calculateConfidenceMap(em_map, apix, noiseBox, testProc, ecdf, lowPassFilter
if windowSizeLocScale is not None:
wn_locscale = windowSizeLocScale;
if window_size is not None:
print("Window size for noise estimation is automatically set to the size of LocScale sliding window.");
wn_locscale = None;
import numpy as np
import FDRutil
from mapUtil import *
import mrcfile
import argparse, math, os, sys
from argparse import RawTextHelpFormatter
import time
......@@ -144,7 +144,7 @@ def makeDiagnosticPlot(map, windowSize, locscale, boxCoord):
if boxCoord != 0 | locscale:
singleBox = True;
locscale = False;
singleBox = False;
if singleBox == False:
visMap[int(center[0]-0.5*sizePatch[0]):(int(center[0]-0.5*sizePatch[0]) + sizePatch[0]),
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