Commit 430edcf3 authored by Jean-Karim Heriche's avatar Jean-Karim Heriche

Added dimensionality reduction section with PCA and UMAP.

parent 8aa301e1
...@@ -23,12 +23,14 @@ RUN R -e "install.packages('DT', repos='https://ftp.gwdg.de/pub/misc/cran/')" ...@@ -23,12 +23,14 @@ RUN R -e "install.packages('DT', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('shiny', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('shiny', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('shinyFiles', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('shinyFiles', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('shinycssloaders', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('shinycssloaders', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('shinybusy', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('shinydashboard', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('shinydashboard', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('ggplot2', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('ggplot2', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('plotly', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('plotly', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('RANN', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('RANN', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "install.packages('BiocManager', repos='https://ftp.gwdg.de/pub/misc/cran/')" RUN R -e "install.packages('BiocManager', repos='https://ftp.gwdg.de/pub/misc/cran/')"
RUN R -e "BiocManager::install('aoles/RBioFormats')" RUN R -e "BiocManager::install('aoles/RBioFormats')"
RUN R -e "install.packages('uwot', repos='https://ftp.gwdg.de/pub/misc/cran/')"
# Copy the app to the image # Copy the app to the image
RUN mkdir -p /usr/local/app/image-data-explorer RUN mkdir -p /usr/local/app/image-data-explorer
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