Image Data Explorer issueshttps://git.embl.de/heriche/image-data-explorer/-/issues2023-09-12T06:20:40Zhttps://git.embl.de/heriche/image-data-explorer/-/issues/41Enable annotations in multiple columns2023-09-12T06:20:40ZJean-Karim HericheEnable annotations in multiple columnsFrom Nathan Stutzman (nbstutzman@ucsd.edu) by email:
> **Multiple Annotations**: There are several aspects I would like to annotate about my data. Right now it only allows me to annotate one column at a time; to annotate a different colu...From Nathan Stutzman (nbstutzman@ucsd.edu) by email:
> **Multiple Annotations**: There are several aspects I would like to annotate about my data. Right now it only allows me to annotate one column at a time; to annotate a different column I have to go back to the Annotation page. It would be nice to be able to annotate multiple columns while I'm looking at the same image.https://git.embl.de/heriche/image-data-explorer/-/issues/40Visualize secondary grouping2023-09-12T06:09:31ZJean-Karim HericheVisualize secondary groupingFrom Nathan Stutzman (nbstutzman@ucsd.edu) by email:
> **Secondary Grouping**: For a lot of my data, I have two dimensions in my grouping scheme and it would be nice to visualize both at the same time. For example, my primary grouping ma...From Nathan Stutzman (nbstutzman@ucsd.edu) by email:
> **Secondary Grouping**: For a lot of my data, I have two dimensions in my grouping scheme and it would be nice to visualize both at the same time. For example, my primary grouping may be by treatment, but I may also be comparing those treatments across timepoints. Right now the best way I can visualize both at once is to group by one and then filter/select by the other grouping, but this isn't the best since I can only show one selection at a time and the selected points black out the other grouping.https://git.embl.de/heriche/image-data-explorer/-/issues/39Document launch_IDE.R2023-07-11T14:36:53ZJean-Karim HericheDocument launch_IDE.RDocument use of script [launch_IDE.R](https://git.embl.de/heriche/image-data-explorer/-/blob/master/launch_IDE.R)Document use of script [launch_IDE.R](https://git.embl.de/heriche/image-data-explorer/-/blob/master/launch_IDE.R)https://git.embl.de/heriche/image-data-explorer/-/issues/38Document toml config file2023-07-11T14:35:00ZJean-Karim HericheDocument toml config fileDocument the configuration parameters available in template [settings_template.toml](https://git.embl.de/heriche/image-data-explorer/-/blob/master/settings_template.toml)Document the configuration parameters available in template [settings_template.toml](https://git.embl.de/heriche/image-data-explorer/-/blob/master/settings_template.toml)https://git.embl.de/heriche/image-data-explorer/-/issues/36Show object from bounding box2023-05-24T08:34:30ZJean-Karim HericheShow object from bounding boxIf the user selects data table columns defining a bounding box, the IDE should extract the corresponding region and display it.
Considerations:
- This requires a bounding box/ROI standard definition. The simplest would be one column ...If the user selects data table columns defining a bounding box, the IDE should extract the corresponding region and display it.
Considerations:
- This requires a bounding box/ROI standard definition. The simplest would be one column for each of min(x), max(x), min(y), max(y), min(z or t) and max(z or t).
- This may have to be limited to some image formats (e.g. ome-zarr) for performance reasons.https://git.embl.de/heriche/image-data-explorer/-/issues/34Handling of large images2022-06-24T07:36:18ZJean-Karim HericheHandling of large imagesLarge images (e.g. EM images) take too long to display.Large images (e.g. EM images) take too long to display.Jean-Karim HericheJean-Karim Herichehttps://git.embl.de/heriche/image-data-explorer/-/issues/32Get images from OMERO2021-06-02T10:07:59ZJean-Karim HericheGet images from OMEROIt should be possible to get images from an OMERO database via the [rOMERO.gateway package](https://github.com/ome/rOMERO-gateway).It should be possible to get images from an OMERO database via the [rOMERO.gateway package](https://github.com/ome/rOMERO-gateway).https://git.embl.de/heriche/image-data-explorer/-/issues/10Add interactive 3d plots2020-06-22T10:27:18ZJean-Karim HericheAdd interactive 3d plots