From d541b89f4f8c41414f15019db936cd8bf3b11351 Mon Sep 17 00:00:00 2001
From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de>
Date: Fri, 21 Jun 2019 10:20:43 +0200
Subject: [PATCH] Add test helper file
---
test/attributes/compare_tables.py | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
create mode 100644 test/attributes/compare_tables.py
diff --git a/test/attributes/compare_tables.py b/test/attributes/compare_tables.py
new file mode 100644
index 0000000..68be45f
--- /dev/null
+++ b/test/attributes/compare_tables.py
@@ -0,0 +1,19 @@
+import numpy as np
+
+
+def load_table(table_file):
+ table = np.genfromtxt(table_file, delimiter='\t', skip_header=1,
+ dtype='float32')
+ return table
+
+
+# tab1 = load_table('./tmp_morpho/table_cells.csv')
+# tab2 = load_table('../../data/0.0.0/tables/em-segmented-cells-labels/morphology.csv')
+tab1 = load_table('./tmp_morpho/table_nuclei.csv')
+tab2 = load_table('../../data/0.0.0/tables/em-segmented-nuclei-labels/morphology.csv')
+print(tab1.shape)
+print(tab2.shape)
+
+close = np.isclose(tab1, tab2)
+print(close.shape)
+print(close.sum(axis=0))
--
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