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pyBOAT
Commit d8aa8d3d authored by Gregor Moenke's avatar Gregor Moenke
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ssg tweaks

parent a977f606
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Showing with 196 additions and 132 deletions
pyboat/ui/data_viewer.py
View file @ d8aa8d3d
......@@ -52,7 +52,7 @@ class DataViewer(QWidget):
# this is the data table
self.df = data
self.anaWindows = {}
self.anaWindows = {} # allows for multiple open analysis windows
self.w_position = 0 # analysis window position offset
self.debug = debug
......@@ -769,7 +769,7 @@ class DataViewer(QWidget):
if L / self.dt < 4:
self.OutOfBounds = MessageWindow(
f"Minimum sliding\nwindow size is {4*self.dt}{self.time_unit} !",
f"Minimum sliding window size is {4*self.dt}{self.time_unit} !",
"Value Error",
)
L = None
......@@ -778,7 +778,7 @@ class DataViewer(QWidget):
if L / self.dt > self.df.shape[0]:
maxL = self.df.shape[0] * self.dt
self.OutOfBounds = MessageWindow(
f"Maximum sliding window\nsize is {maxL:.2f} {self.time_unit}!",
f"Maximum sliding window size is {maxL:.2f} {self.time_unit}!",
"Value Error",
)
L = None
......
pyboat/ui/start_menu.py
View file @ d8aa8d3d
......@@ -31,6 +31,7 @@ from PyQt5.QtCore import QUrl
from pyboat.ui.util import MessageWindow, load_data, interpol_NaNs
from pyboat.ui.data_viewer import DataViewer
from pyboat.ui.synth_gen import SynthSignalGen
from pyboat import __version__
# matplotlib settings
from matplotlib import rc
......@@ -55,7 +56,7 @@ class MainWindow(QMainWindow):
def initUI(self):
self.setGeometry(80, 100, 400, 50)
self.setWindowTitle("pyBOAT")
self.setWindowTitle(f"pyBOAT {__version__}")
# Actions for the menu - status bar
main_widget = QWidget()
......
pyboat/ui/synth_gen.py
View file @ d8aa8d3d
......@@ -57,10 +57,8 @@ class SynthSignalGen(QWidget):
self.debug = debug
self.raw_signal = None
self.Nt = 500 # needs to be set here..
self.Nt = 500 # needs to be set here for initial plot..
self.dt = 1 # .. to create the default signal
self.T_c = None # gets initialized from the UI -> qset_T_c
self.L = None # gets initialized from the UI -> qset_L
self.tvec = None # gets initialized by vector_prep
self.time_unit = None # gets initialized by qset_time_unit
......@@ -222,7 +220,7 @@ class SynthSignalGen(QWidget):
d_label = QLabel("Noise Strength")
self.d_edit = QLineEdit(parent=self.noise_box)
self.d_edit.setToolTip("Compare to set oscillator amplitudes..")
self.d_edit.setToolTip("Compare to amplitudes..")
set_max_width(self.d_edit, iwidth)
self.d_edit.setValidator(QDoubleValidator(bottom=0, top=999999))
self.d_edit.insert("0.5") # initial noise strength
......@@ -266,9 +264,9 @@ class SynthSignalGen(QWidget):
ssgButton_box = QWidget()
ssgButton_box_layout = QHBoxLayout()
ssgButton_box.setLayout(ssgButton_box_layout)
ssgButton_box_layout.addStretch(0)
#ssgButton_box_layout.addStretch(0)
ssgButton_box_layout.addWidget(ssgButton)
ssgButton_box_layout.addStretch(0)
#ssgButton_box_layout.addStretch(0)
control_grid = QWidget()
control_grid_layout = QGridLayout()
......@@ -303,14 +301,14 @@ class SynthSignalGen(QWidget):
sinc_options_box.setLayout(sinc_options_layout)
## Amplitude envelope parameter
L_edit = QLineEdit()
L_edit.setMaximumWidth(70)
L_edit.setValidator(self.envelopeV)
self.L_edit = QLineEdit()
self.L_edit.setMaximumWidth(70)
self.L_edit.setValidator(self.envelopeV)
envelope_options_box = QGroupBox("Amplitude Envelope")
envelope_options_layout = QGridLayout()
envelope_options_layout.addWidget(QLabel("Window Size:"), 0, 0)
envelope_options_layout.addWidget(L_edit, 0, 1)
envelope_options_layout.addWidget(self.L_edit, 0, 1)
envelope_options_box.setLayout(envelope_options_layout)
# plot options box
......@@ -494,9 +492,6 @@ class SynthSignalGen(QWidget):
self.Nt_edit.insert(str(self.Nt)) # initial signal length
dt_edit.insert(str(self.dt)) # initial sampling interval is 1
self.T_c_edit.textChanged[str].connect(self.qset_T_c)
L_edit.textChanged[str].connect(self.qset_L)
# create the default signal
self.create_signal()
......@@ -512,36 +507,34 @@ class SynthSignalGen(QWidget):
if self.raw_signal is not None:
self.doPlot()
def toggle_trend(self, state):
if self.debug:
print("old state:", self.cb_trend.isChecked())
print("new state:", self.cb_trend.isChecked())
# trying to plot the trend
if state == Qt.Checked:
# user warning - no effect without T_c set
if not self.T_c:
self.NoTrend = MessageWindow(
"Specify a cut-off period!", "Missing value"
)
T_c = self.get_T_c(self.T_c_edit)
if not T_c:
self.cb_trend.setChecked(False)
# self.cb_use_detrended.setChecked(False)
# signal selected?
if self.raw_signal is not None:
if np.any(self.raw_signal):
self.doPlot()
def toggle_envelope(self, state):
if state == Qt.Checked:
# user warning - no effect without L set
if not self.L:
self.NoEnvelope = MessageWindow(
"Specify a sliding window size!", "Missing value"
)
# trying to plot the envelope
if state == Qt.Checked:
L = self.get_L(self.L_edit)
if not L:
self.cb_envelope.setChecked(False)
self.cb_use_envelope.setChecked(False)
# signal selected?
if self.raw_signal is not None:
if np.any(self.raw_signal):
self.doPlot()
# connected to unit_edit
......@@ -577,44 +570,57 @@ class SynthSignalGen(QWidget):
if self.debug:
print("dt set to:", self.dt)
# connected to T_c_edit
def qset_T_c(self, text):
def get_T_c(self, T_c_edit):
'''
Uses self.T_c_edit, argument just for clarity. Checks
for empty input, this function only gets called when
a detrending operation is requested. Hence, an empty
QLineEdit will display a user warning and return nothing..
'''
# value checking done by validator, accepts also comma '1,1' !
tc = text.replace(",", ".")
tc = T_c_edit.text().replace(",", ".")
try:
self.T_c = float(tc)
T_c = float(tc)
if self.debug:
print("T_c set to:", T_c)
return T_c
# empty line edit
except ValueError:
self.NoTrend = MessageWindow(
"Detrending parameter not set,\n" + "specify a cut-off period!",
"No Trend",
)
if self.debug:
print("T_c ValueError", text)
pass
if self.debug:
print("T_c set to:", self.T_c)
# connected to T_c_edit
def qset_L(self, text):
print("T_c ValueError", tc)
return None
def get_L(self, L_edit):
# value checking done by validator, accepts also comma '1,1' !
L = text.replace(",", ".")
L = L_edit.text().replace(",", ".")
try:
L = int(L)
# empty line edit
except ValueError:
self.NoTrend = MessageWindow(
"Envelope parameter not set,\n" + "specify a sliding window size!",
"No Envelope",
)
if self.debug:
print("L ValueError", text)
pass
# still in sampling interval units
self.L = int(L)
print("L ValueError", L)
return None
if self.debug:
print("L set to:", self.L)
print("L set to:", L)
return L
def set_initial_periods(self, force=False):
"""
......@@ -660,13 +666,42 @@ class SynthSignalGen(QWidget):
T_c_ini = np.round(T_c_ini, 3)
self.T_c_edit.insert(str(T_c_ini))
# retrieve and check set wavelet parameters
def set_wlet_pars(self):
'''
Retrieves and checks the set wavelet parameters
of the 'Analysis' input box reading the following
QLineEdits:
self.Tmin
self.Tmax
self.step_num
self.pmax
Further the checkboxes regarding detrending and amplitude
normalization are evaluated. And
self.get_L()
self.get_T_c()
are called if needed. These respective parameters are set to False
if the opereation in question is not requested.
Returns
-------
wlet_pars : dictionary holding the retrieved parameters,
L and T_c are set to None if no amplitude
normalization or detrending operation should be done
'''
wlet_pars = {}
# period validator
vali = self.periodV
# read all the LineEdits:
# -- read all the QLineEdits --
text = self.T_min.text()
T_min = text.replace(",", ".")
......@@ -678,8 +713,9 @@ class SynthSignalGen(QWidget):
"Wavelet periods out of bounds!", "Value Error"
)
return False
self.T_min_value = float(T_min)
wlet_pars['T_min'] = float(T_min)
step_num = self.step_num.text()
check, _, _ = posintV.validate(step_num, 0)
if self.debug:
......@@ -689,10 +725,22 @@ class SynthSignalGen(QWidget):
"The Number of periods must be a positive integer!", "Value Error"
)
return False
self.step_num_value = int(step_num)
text = self.T_max.text()
wlet_pars['step_num'] = int(step_num)
if int(step_num) > 1000:
choice = QMessageBox.question(
self,
"Too much periods?: ",
"High number of periods: Do you want to continue?",
QMessageBox.Yes | QMessageBox.No,
)
if choice == QMessageBox.Yes:
pass
else:
return False
text = self.T_max.text()
T_max = text.replace(",", ".")
check, _, _ = vali.validate(T_max, 0)
if self.debug:
......@@ -703,7 +751,7 @@ class SynthSignalGen(QWidget):
"Wavelet highest period out of bounds!", "Value Error"
)
return False
self.T_max_value = float(T_max)
wlet_pars['T_max'] = float(T_max)
text = self.p_max.text()
p_max = text.replace(",", ".")
......@@ -714,48 +762,84 @@ class SynthSignalGen(QWidget):
# check for empty string:
if p_max:
self.p_max_value = float(p_max)
wlet_pars['p_max'] = float(p_max)
else:
self.p_max_value = None
wlet_pars['p_max'] = None
# -- the checkboxes --
# detrend for the analysis?
if self.cb_use_detrended.isChecked():
T_c = self.get_T_c(self.T_c_edit)
if T_c is None:
return False # abort settings
wlet_pars['T_c'] = T_c
else:
# indicates no detrending requested
wlet_pars['T_c'] = False
# amplitude normalization is downstram of detrending!
if self.cb_use_envelope.isChecked():
L = self.get_L(self.L_edit)
if L is None:
return False # abort settings
wlet_pars['L'] = L
else:
# indicates no ampl. normalization
wlet_pars['L'] = False
# success!
return True
return wlet_pars
def calc_trend(self):
""" Uses maximal sinc window size """
trend = pyboat.sinc_smooth(raw_signal=self.raw_signal, T_c=self.T_c, dt=self.dt)
T_c = self.get_T_c(self.T_c_edit)
if not T_c:
return
if self.debug:
print("Calculating trend with T_c = ", T_c)
trend = pyboat.sinc_smooth(raw_signal=self.raw_signal, T_c = T_c, dt=self.dt)
return trend
def calc_envelope(self):
if self.L < 3:
L = self.get_L(self.L_edit)
if not L:
return
if self.debug:
print("Calculating envelope with L = ", L)
if L / self.dt < 4:
self.OutOfBounds = MessageWindow(
f"Minimum sliding\nwindow size is {3*self.dt}{self.time_unit} !",
f"Minimum sliding window size is {4*self.dt}{self.time_unit} !",
"Value Error",
)
self.L = None
L = None
return
if self.L > self.Nt:
maxL = self.Nt * self.dt
if L / self.dt > self.raw_signal.size:
maxL = self.raw_signal.size * self.dt
self.OutOfBounds = MessageWindow(
f"Maximum sliding window\nsize is {maxL:.2f} {self.time_unit}!",
f"Maximum sliding window size is {maxL:.2f} {self.time_unit}!",
"Value Error",
)
self.L = None
L = None
return
# cut of frequency set?!
if self.T_c:
if self.debug:
print("calculating envelope for detrended signal", self.L, self.T_c)
if self.cb_trend.isChecked():
trend = self.calc_trend()
if trend is None:
return
signal = self.raw_signal - trend
envelope = pyboat.sliding_window_amplitude(signal,
window_size=self.L,
window_size = L,
dt = self.dt)
if self.cb_detrend.isChecked():
......@@ -768,11 +852,11 @@ class SynthSignalGen(QWidget):
# otherwise add the mean
else:
if self.debug:
print("calculating envelope for raw signal", self.L)
print("calculating envelope for raw signal", L)
mean = self.raw_signal.mean()
envelope = pyboat.sliding_window_amplitude(
self.raw_signal, window_size=self.L
self.raw_signal, window_size = L, dt = self.dt
)
return envelope + mean
......@@ -782,6 +866,12 @@ class SynthSignalGen(QWidget):
Retrieves all paramters from the synthesizer controls
and calls the ssg. All line edits have validators set,
however we have to check for intermediate empty inputs..
This sets
self.raw_signal
according to the synthesizer controls.
"""
# the signal components
......@@ -925,19 +1015,18 @@ class SynthSignalGen(QWidget):
)
# check if trend is needed
if self.T_c and (self.cb_trend.isChecked() or self.cb_detrend.isChecked()):
if self.debug:
print("Calculating trend with T_c = ", self.T_c)
if self.cb_trend.isChecked() or self.cb_detrend.isChecked():
trend = self.calc_trend()
if trend is None:
return
else:
trend = None
# envelope calculation
if self.L and self.cb_envelope.isChecked():
if self.debug:
print("Calculating envelope with L = ", self.L)
if self.cb_envelope.isChecked():
envelope = self.calc_envelope()
if envelope is None:
return
else:
envelope = None
......@@ -978,71 +1067,45 @@ class SynthSignalGen(QWidget):
self.tsCanvas.show()
def run_wavelet_ana(self):
""" run the Wavelet Analysis """
""" run the Wavelet Analysis on the synthetic signal """
if not np.any(self.raw_signal):
self.NoSignalSelected = MessageWindow(
"Please select a signal first!", "No Signal"
"Please create a signal first!", "No Signal"
)
return False
succ = self.set_wlet_pars() # Error handling done there
if not succ:
wlet_pars = self.set_wlet_pars() # Error handling done there
if not wlet_pars:
if self.debug:
print("Wavelet parameters could not be set!")
return False
# move to set_wlet_pars?!
if self.step_num_value > 1000:
choice = QMessageBox.question(
self,
"Too much periods?: ",
"High number of periods: Do you want to continue?",
QMessageBox.Yes | QMessageBox.No,
)
if choice == QMessageBox.Yes:
pass
else:
return
# detrend for the analysis?
if self.cb_use_detrended.isChecked() and not self.T_c:
self.NoTrend = MessageWindow(
"Detrending parameter not set,\n" + "specify a cut-off period!",
"No Trend",
)
return
elif self.cb_use_detrended.isChecked():
if self.cb_use_detrended.isChecked():
trend = self.calc_trend()
signal = self.raw_signal - trend
else:
signal = self.raw_signal
# amplitude normalization is downstram of detrending!
if self.cb_use_envelope.isChecked() and not self.L:
self.NoTrend = MessageWindow(
"Envelope parameter not set,\n" + "specify a sliding window size!",
"No Envelope",
)
return
elif self.cb_use_envelope.isChecked():
signal = pyboat.normalize_with_envelope(signal, self.L, self.dt)
if self.cb_use_envelope.isChecked():
L = self.get_L(self.L_edit)
signal = pyboat.normalize_with_envelope(signal, L, dt = self.dt)
self.w_position += 20
self.anaWindows[self.w_position] = WaveletAnalyzer(
signal=signal,
dt=self.dt,
T_min=self.T_min_value,
T_max=self.T_max_value,
T_min = wlet_pars['T_min'],
T_max = wlet_pars['T_max'],
p_max = wlet_pars['p_max'],
step_num=wlet_pars['step_num'],
position=self.w_position,
signal_id="Synthetic Signal",
step_num=self.step_num_value,
p_max=self.p_max_value,
time_unit=self.time_unit,
signal_id='Synthetic Signal',
time_unit=self.time_unit,
DEBUG=self.debug,
)
......
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