gitignore and obsolete files

1769cb33 · Antonio Politi · e5f18bca · 1769cb33 · 1769cb33 · e5f18bca
Commit 1769cb33 authored Jan 24, 2017 by Antonio Politi
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.gitignore .gitignore +4 -1

README.md README.md +8 -0

results/fitnup107nup358/.Rhistory results/fitnup107nup358/.Rhistory +0 -512

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--- a/.gitignore
+++ b/.gitignore
 *~
+*.lsm
+*.h5
+*.hdf
 *.asv
 *.mat
-.Rhistory
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+.Rhistory
--- a/README.md
+++ b/README.md
+# NPC maturation
+This repositories contains code and data for the anlysis and computational modelling of NPC maturation
+
+## Extract cytoplasmic and nucleoplasmic intensities in the absence of an external marker
+This pipeline combines ilastik, and matlab workflows. Images are typically starting from metaphase.
+1. Convert lsm files to hdf5 for reading in ilastik
+2. For a given cell line create or reuse a classifier (ilastik 1.8)
+3. Process all files and save segmented images
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--- a/results/fitnup107nup358/.Rhistory
+++ b/results/fitnup107nup358/.Rhistory