Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Antonio Politi
NPCMaturation
Commits
1769cb33
Commit
1769cb33
authored
Jan 24, 2017
by
Antonio Politi
Browse files
gitignore and obsolete files
parent
e5f18bca
Changes
3
Expand all
Hide whitespace changes
Inline
Side-by-side
.gitignore
View file @
1769cb33
*~
*.lsm
*.h5
*.hdf
*.asv
*.mat
.Rhistory
\ No newline at end of file
.Rhistory
README.md
View file @
1769cb33
# NPC maturation
This repositories contains code and data for the anlysis and computational modelling of NPC maturation
## Extract cytoplasmic and nucleoplasmic intensities in the absence of an external marker
This pipeline combines ilastik, and matlab workflows. Images are typically starting from metaphase.
1.
Convert lsm files to hdf5 for reading in ilastik
2.
For a given cell line create or reuse a classifier (ilastik 1.8)
3.
Process all files and save segmented images
\ No newline at end of file
results/fitnup107nup358/.Rhistory
deleted
100644 → 0
View file @
e5f18bca
This diff is collapsed.
Click to expand it.
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment