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Antonio Politi
NPCMaturation
Commits
626768d0
Commit
626768d0
authored
Apr 02, 2017
by
Antonio Politi
Browse files
remove experimental data from git repo
parent
cf7a8b04
Changes
463
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expdata/STEDdata/160428-STED-ratio-Nup107only-to-mature.xlsx
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expdata/emdata/HeLa-H2b-4D-24h-sum.xlsx
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expdata/emdata/Minipore-number-to-Antonio-141022.xlsx
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expdata/emdata/density_innercore.txt
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time int_avg int_sd mat_avg mat_sd
19.2000 3.7066 1.1912 4.3051 2.9756
24.4000 2.5548 1.8080 3.2638 3.0584
28.4000 2.8685 1.9448 0.7257 0.8852
36.3000 1.6465 1.2804 3.8867 3.1354
42.0000 5.3638 3.5139 4.5204 2.8718
53.2000 2.7601 1.0185 3.7098 1.5762
60.8000 0.3114 0.6229 9.3678 2.5641
65.6000 0.6860 1.0028 5.9860 1.9396
73.6000 1.2769 1.4383 6.6834 0.7126
82.9000 0.8490 0.5670 11.0643 1.8468
100.2000 0.4336 0.5956 11.5611 1.2783
116.4000 1.1289 1.2736 9.2309 0.7013
\ No newline at end of file
expdata/emdata/density_outercore.txt
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time int_avg int_sd mat_avg mat_sd
19.2 5.4398 4.0326 7.0806 2.3042
24.4 2.368 0.869 9.7306 1.4395
28.4 4.9731 2.2017 7.0488 2.3073
36.3 3.5654 1.3458 6.7678 2.8673
42 2.7424 2.1469 9.2873 1.8365
53.2 2.877 1.1693 7.9687 1.9991
60.8 0.2252 0.4504 10.5707 1.5535
65.6 1.068 0.8514 7.5591 2.0611
73.6 0.398 0.6893 11.1441 2.5738
82.9 1.1013 1.1236 12.6691 2.933
100.2 1.8179 0.6596 9.3471 4.0471
116.4 0.388 0.6721 10.4042 2.9619
expdata/emdata/emdata.mat
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expdata/emdata/surface-area-2h-data-Shotaro.xlsx
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expdata/emdata/surfaceNucleusFit_24h_new.txt
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%surface area nucleus fitted to a0 + a1*(1-exp(-kg1*(t-ts)) + kg2*(t-ts). Time is time after anaphase (in min)
%a0(um2) a1(um2) kg1/min kg2/min ts min
4.240e+02 1.613e+02 7.219e-02 3.969e-01 1.0e+01
expdata/emdata/surfaceNucleusFit_24h_new_tmp.eps
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-10
33
-27
34
-38
33
-36
34
6
33
-26
34
9
34
3
33
-22
34
-9
33
9
34
-13
33
31
34
-46
34
-12
33
29
34
-29
33
-9
34
1
33
-33
34
84
33
-63
34
10
34
-1
33
-2
34
-10
33
-7
34
-36
33
-6
34
-12
33
39
34
-1
34
8
33
5
34
8
33
6
34
-2
33
-10
34
-3
33
-24
34
-6
34
-7
33
-9
34
18
33
-6
34
-22
33
-7
34
-13
33
-17
34
-3
34
-14
33
-44
34
-7
33
-4
34
-10
686
1679
100
MP
stroke
33
-34
34
-279
619
1992
3
MP
stroke
24
w
/c8
{
0.000000
0.000000
1.000000
sr
}
bdef
c8
33
-8
34
-7
33
-7
34
-8
33
-7
34
-7
34
-8
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
33
-7
34
-7
34
-7
33
-8
34
-7
33
-7
34
-8
33
-7
34
-7
33
-8
34
-7
34
-7
33
-8
34
-7
33
-7
34
-8
33
-7
34
-7
33
-8
34
-7
34
-7
33
-7
34
-8
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
34
-7
33
-7
34
-8
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
34
-7
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
34
-7
33
-7
34
-8
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
34
-7
33
-7
34
-8
33
-7
34
-7
33
-7
34
-8
33
-7
34
-7
34
-8
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
33
-7
34
-7
34
-8
33
-7
34
-7
33
-8
34
-7
33
-7
34
-8
33
-8
34
-8
34
-9
33
-12
34
-16
33
-24
34
-44
686
1593
100
MP
stroke
33
-81
34
-161
619
1835
3
MP
stroke
gr
24
w
c8
0
sg
2063
2536
mt
(time
\(
min
\)
)
s
203
1992
mt
-90
rotate
(A, Nuclear surface
\(
um2
\)
)
s
90
rotate
1233
172
mt
(A=a0+a1*
\(
1-exp
\(
-kg1*
\(
t-ts
\)\)\)
+kg2*
\(
t-ts
\)
)
s
154
310
mt
( a0=424.0 um2, a1=161.3 um2, kg1=7.22e-02/min, kg2=3.97e-01
\
/mi
n
, ts=10 min)
s
6
w
1
sg
0
1843
3490
0
0
-1843
586
4808
4
MP
PP
-3490
0
0
1843
3490
0
0
-1843
586
4808
5
MP
stroke
4
w
DO
SO
6
w
0
sg
586
4808
mt
4076
4808
L
586
4808
mt
586
2965
L
586
4808
mt
586
4773
L
553
4953
mt
(0)
s
1167
4808
mt
1167
4773
L
1067
4953
mt
(200)
s
1749
4808
mt
1749
4773
L
1649
4953
mt
(400)
s
2331
4808
mt
2331
4773
L
2231
4953
mt
(600)
s
2912
4808
mt
2912
4773
L
2812
4953
mt
(800)
s
3494
4808
mt
3494
4773
L
3361
4953
mt
(1000)
s
4076
4808
mt
4076
4773
L
3943
4953
mt
(1200)
s
586
4808
mt
620
4808
L
485
4852
mt
(0)
s
586
4500
mt
620
4500
L
251
4544
mt
(0.005)
s
586
4193
mt
620
4193
L
318
4237
mt
(0.01)
s
586
3886
mt
620
3886
L
251
3930
mt
(0.015)
s
586
3579
mt
620
3579
L
318
3623
mt
(0.02)
s
586
3272
mt
620
3272
L
251
3316
mt
(0.025)
s
586
2965
mt
620
2965
L
318
3009
mt
(0.03)
s
gs
586
2965
3491
1844
MR
c
np
24
w
c8
29
0
29
0
29
1
29
0
29
0
29
0
30
0
29
0
29
0
29
0
29
0
29
0
29
1
29
0
29
0
29
0
29
0
29
0
30
0
29
0
29
1
29
0
29
0
29
0
29
0
29
0
29
0
29
0
29
0
29
1
30
0
29
0
29
0
29
0
29
0
29
0
29
1
29
0
29
0
29
0
29
0
29
0
30
0
29
1
29
0
29
0
29
0
29
0
29
0
29
0
29
1
29
0
29
0
29
0
30
0
29
0
29
1
29
0
29
0
29
0
29
0
29
0
29
1
29
0
29
0
29
0
30
0
29
1
29
0
29
0
29
0
29
0
29
1
29
0
29
0
29
0
29
0
29
1
30
0
29
0
29
0
29
0
29
1
29
0
29
0
29
0
29
1
29
0
29
0
29
1
30
0
29
2
29
2
29
4
29
8
29
17
29
36
29
75
29
165
673
4459
100
MP
stroke
29
379
29
1017
615
3063
3
MP
stroke
DA
6
w
0
sg
2937
0
615
4776
2
MP
stroke
gr
DA
2063
5096
mt
(time
\(
min
\)
)
s
169
4344
mt
-90
rotate
(d logA /dt
\(
1/min
\)
)
s
90
rotate
569
4851
mt
( )
s
4060
3007
mt
( )
s
SO
1
sg
0
334
1846
0
0
-334
2171
3359
4
MP
PP
-1846
0
0
334
1846
0
0
-334
2171
3359
5
MP
stroke
4
w
DO
SO
6
w
0
sg
2171
3025
mt
4017
3025
L
2171
3359
mt
4017
3359
L
4017
3359
mt
4017
3025
L
2171
3359
mt
2171
3025
L
2171
3359
mt
4017
3359
L
2171
3359
mt
2171
3025
L
2171
3025
mt
4017
3025
L
2171
3359
mt
4017
3359
L
4017
3359
mt
4017
3025
L
2171
3359
mt
2171
3025
L
2649
3160
mt
(fullmodel)
s
gs
2171
3025
1847
335
MR
c
np
24
w
c8
367
0
2244
3117
2
MP
stroke
gr
24
w
c8
0
sg
2649
3309
mt
(d logA/dt = 5.19e-04/min)
s
gs
2171
3025
1847
335
MR
c
np
DA
6
w
367
0
2244
3266
2
MP
stroke
SO
gr
6
w
end
%%Color Dict
eplot
%%EndObject
epage
end
showpage
%%Trailer
%%EOF
expdata/emdata/surfaceNucleusFit_24h_new_tmp.fig
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cf7a8b04
File deleted
expdata/emdata/surfaceNucleusFit_24h_new_tmp.jpg
deleted
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View file @
cf7a8b04
67.8 KB
expdata/emdata/surfaceNucleusFit_24h_new_tmp.txt
deleted
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View file @
cf7a8b04
%surface area nucleus fitted to a0 + a1*(1-exp(-kg1*(t-ts)) + kg2*(t-ts). Time is time after anaphase (in min)
%a0(um2) a1(um2) kg1/min kg2/min ts min
4.240e+02 1.613e+02 7.219e-02 3.969e-01 1.0e+01
expdata/emdata/surfaceNucleusFit_2h.txt
deleted
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View file @
cf7a8b04
%surface area nucleus fitted to a0 + a1*(1-exp(-kg1*(t-ts)) + kg2*(t-ts). Time is time after anaphase (in min)
%a0(um2) a1(um2) kg1/min kg2/min ts min
3.175e+02 1.916e+02 1.647e-01 5.122e-01 8
expdata/emdata/surfaceNucleus_24h_new.txt
deleted
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View file @
cf7a8b04
% HeLa-H2B-4D-24h-sum.xlsx
0.166666667 407.7144316 68.85010145
0.333333333 528.4113285 38.25902195
0.5 545.8308869 37.45184456
0.666666667 566.5263546 52.52273458
0.833333333 581.5070816 65.54394039
1 582.5058843 62.63906516
1.166666667 604.5654448 60.71830203
1.333333333 617.3827407 66.2741207
1.5 619.6808723 66.82646074
1.666666667 625.1862621 62.88596307
1.833333333 634.3958589 65.13751258
2 642.106259 69.17118087
2.166666667 656.5171993 71.65065241
2.333333333 660.0799594 71.91933172
2.5 656.2462918 77.53766849
2.666666667 655.5874139 72.25112485
2.833333333 656.7088401 69.64814133
3 664.4699204 74.3172357
3.166666667 675.2280497 71.76894453
3.333333333 678.8230408 73.92448303
3.5 684.540175 74.18811414
3.666666667 686.7455663 75.25470832
3.833333333 685.8019606 77.60541631
4 687.8487958 84.13560819
4.166666667 686.7053397 85.33575256
4.333333333 691.8175678 95.05015858
4.5 690.8676407 93.2083874
4.666666667 675.6651272 99.6046057
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5 686.7962376 100.7288929
5.166666667 698.3352553 92.94793142
5.333333333 699.3531523 89.89040212
5.5 704.8510608 90.2644098
5.666666667 712.663784 96.68997729
5.833333333 713.7696197 97.21666425
6 709.6485889 98.66180491
6.166666667 726.8645754 81.5100884
6.333333333 697.1337 97.70396424
6.5 719.0778916 101.5471063
6.666666667 724.5033796 107.7766503
6.833333333 728.8552715 107.1235523
7 741.2041322 103.3625303
7.166666667 723.6089733 101.830181
7.333333333 729.5717198 101.3490376
7.5 741.0288466 87.5519332
7.666666667 735.4173313 98.82362049
7.833333333 735.804374 92.08571443
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8.166666667 749.6779651 105.8888703
8.333333333 772.2092872 116.6889221
8.5 767.1836298 113.5345878
8.666666667 771.676499 122.7810422
8.833333333 774.7363934 111.6929589
9 765.5832981 105.5832699
9.166666667 788.2002017 108.7681552
9.333333333 801.3870648 101.541717
9.5 806.4704243 91.73872975
9.666666667 809.486501 89.2928061
9.833333333 804.725441 93.93698987
10 803.9762704 92.47081315
10.16666667 816.3071108 90.3767804
10.33333333 828.5606667 91.64612485
10.5 830.1950568 95.69194556
10.66666667 829.1207291 97.64948323
10.83333333 832.5410124 93.89990516
11 836.5115798 94.55123807
11.16666667 838.6542803 91.10523398
11.33333333 844.6244084 92.40885311
11.5 848.1822925 95.13916851
11.66666667 849.7889162 93.8101261