compute background value batch

expdata/livecellCalibrated/computeBGValues_batch.m

@@ -2,18 +2,19 @@ function main()
 %% get main paths
 wdir = 'C:\Users\toni\Dropbox\NPCMaturation\expdata\livecellCalibrated';
 dirnames = dir(wdir);
-for idir = 8
+%160706-HeLa107-4D-cell-4-t6 time point 
+for idir = 8%:length(dirnames)
     if dirnames(idir).isdir
         mdir = fullfile(wdir, dirnames(idir).name, 'Result');
     else
         continue
     end
-h5dir = fullfile(mdir,  'BGComp', 'h5');
-h5segdir = fullfile(mdir,  'BGComp', 'h5_SimpleSegmentation');
-segdir = fullfile(mdir,  'Segmentation');
-outdir = fullfile(mdir,  'BGComp');
-recompute = 1;
-processDirectory(h5dir, h5segdir, segdir, outdir, 24);
+    h5dir = fullfile(mdir,  'BGComp', 'h5');
+    h5segdir = fullfile(mdir,  'BGComp', 'h5_SimpleSegmentation');
+    segdir = fullfile(mdir,  'Segmentation');
+    outdir = fullfile(mdir,  'BGComp');
+    recompute = 1;
+    processDirectory(h5dir, h5segdir, segdir, outdir, 8);
 end
 
 function processDirectory(h5dir, h5segdir, segdir, outdir, istartfile)