diff --git a/README.rst b/README.rst index 872ab73ae1eddc6254cd3601e9aa6335218eb44b..3143042d74263c271f5028cdb28d114df2a8f9e1 100644 --- a/README.rst +++ b/README.rst @@ -20,7 +20,7 @@ EMBL utilities Examples ======== -Submitjob +submitjob --------- Save this into ``myscript.job`` and launch with ``submitjob myscript.job``. If using SLURM you can use ``submit-slurm`` instead:: @@ -42,3 +42,35 @@ Save this into ``myscript.job`` and launch with ``submitjob myscript.job``. If u # Some more jobs to run as part of the same array python compute_something_else.py python validate.py + +perms +----- + +Display permissions of path to reach the file, resolving any symlinks along the way :: + + % perms /g/scb2/bork/mocat/software/R/3.4.1/bin/R + + -r-xr-xr-x 3 mocat mocat 9468 Jan 1 1970 /g/bork3/home/mocat/nix/store/6549ws1c4y0ibj3qyfmd7d0kzyfzgzcd-R-3.4.1/bin/R + dr-xr-xr-x 2 mocat mocat 4096 Jan 1 1970 /g/bork3/home/mocat/nix/store/6549ws1c4y0ibj3qyfmd7d0kzyfzgzcd-R-3.4.1/bin + dr-xr-xr-x 6 mocat mocat 4096 Jan 1 1970 /g/bork3/home/mocat/nix/store/6549ws1c4y0ibj3qyfmd7d0kzyfzgzcd-R-3.4.1 + drwxr-xr-x 6717 mocat mocat 3424256 Feb 14 19:22 /g/bork3/home/mocat/nix/store + drwxr-xr-x 7 mocat mocat 4096 Mar 25 2017 /g/bork3/home/mocat/nix + drwxr-xr-x 16 mocat mocat 4096 Feb 14 19:27 /g/bork3/home/mocat + drwxr-x--t 86 adm_bork bork 8192 Nov 3 10:51 /g/bork3/home + drwxr-xr-x 32 adm_bork bork 4096 Apr 4 2017 /g/bork3 + drwxr-xr-x 10 root root 0 Feb 19 13:31 /g + drwxr-xr-x 36 root root 4096 Oct 12 15:40 / + +qs +-- + +Show status of different clusters:: + + % qs alpha beta sigma + + Host CPU CPU-Free MEM MEM-Free Usage % Avail % Rank + alpha 64 57 940.4GiB 486.2GiB 28.62 50.70 2.99 + beta 64 24 234.9GiB 0.0B 80.25 0.00 0.00 + sigma 92 10 173.5GiB 90.8GiB 68.54 9.77 0.12 + --------------- -------- -------- -------- -------- -------- -------- -------- + GLOBAL 220 91 1.3TiB 577.0GiB 61.49 17.56