From 767790a68b62c906df1a67b298c90b7af67a9cd3 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Tue, 26 Sep 2023 10:50:28 +0200
Subject: [PATCH] Linked test data for z-stack operation
---
extensions/chaeo/conf/__init__.py | 0
extensions/chaeo/conf/testing.py | 15 +++++++++++++++
2 files changed, 15 insertions(+)
create mode 100644 extensions/chaeo/conf/__init__.py
create mode 100644 extensions/chaeo/conf/testing.py
diff --git a/extensions/chaeo/conf/__init__.py b/extensions/chaeo/conf/__init__.py
new file mode 100644
index 00000000..e69de29b
diff --git a/extensions/chaeo/conf/testing.py b/extensions/chaeo/conf/testing.py
new file mode 100644
index 00000000..13b5ea89
--- /dev/null
+++ b/extensions/chaeo/conf/testing.py
@@ -0,0 +1,15 @@
+from pathlib import Path
+
+root = Path.home() / 'model-server'
+
+czi_multichannel_zstack = {
+ 'path': root / 'testing' / 'proj0004-exp0038-SelectionA10-01.czi',
+ 'w': 2048,
+ 'h': 2048,
+ 'c': 5,
+ 'z': 21,
+}
+
+pixel_classifier = {
+ 'path': root / 'ilastik' / 'AF405-bodies_boundaries.ilp'
+}
--
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