From d57cc42bbd5930d5936d032292662f9caea6ec19 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Fri, 26 Apr 2024 13:21:54 +0200
Subject: [PATCH] Stable conversion to relpaths
---
model_server/scripts/correct_ilastik_abspath.py | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/model_server/scripts/correct_ilastik_abspath.py b/model_server/scripts/correct_ilastik_abspath.py
index 234031d2..f915bf3f 100644
--- a/model_server/scripts/correct_ilastik_abspath.py
+++ b/model_server/scripts/correct_ilastik_abspath.py
@@ -26,8 +26,10 @@ def make_abspath_to_relpath(ilp_filename: str, my_root: Path, their_root: Path):
infos[lane][role]['filePath'] = str(pa_img_rel)
return pa_ilp_new
-if __name__ == '__main__':
+
+
+if __name__ == '__main__':
files = [
'01_ilastik_files/240301_LSM900_DNA_PC.ilp',
'01_ilastik_files/240320_LSM900_DNA_OC_new.ilp',
@@ -42,3 +44,5 @@ if __name__ == '__main__':
)
print(f'Finished converting {new_ilp}')
+
+
--
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