diff --git a/extensions/chaeo/examples/__init__.py b/extensions/chaeo/examples/__init__.py new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/extensions/ilastik/examples/batch_run_patches.py b/extensions/chaeo/examples/batch_run_patches.py similarity index 92% rename from extensions/ilastik/examples/batch_run_patches.py rename to extensions/chaeo/examples/batch_run_patches.py index 5b67bb3dd70e6cfdda2bc980c59481709c862aea..291b5c52a5f1900d19f57711446f14427753b20e 100644 --- a/extensions/ilastik/examples/batch_run_patches.py +++ b/extensions/chaeo/examples/batch_run_patches.py @@ -26,14 +26,14 @@ if __name__ == '__main__': result = export_patches_from_multichannel_zstack( input_zstack_path=where_czi/ff, px_model=px_model, - pxmap_threshold=0.6, + pxmap_threshold=0.25, pixel_class=0, zmask_channel=0, patches_channel=4, where_output=where_output, mask_type='boxes', - zmask_filters={'area': (1e2, 1e5)}, - zmask_expand_box_by=(64, 3), + zmask_filters={'area': (1e3, 1e5)}, + zmask_expand_box_by=(128, 3), ) # parse and record results