From e694b90ea31a867f8adaa70f00ede7d3b2e86ec7 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Wed, 6 Mar 2024 13:15:29 +0100
Subject: [PATCH] Re-merged option to automatically MIP z-stacks sent to
ilastik workflow
---
model_server/extensions/ilastik/workflows.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/model_server/extensions/ilastik/workflows.py b/model_server/extensions/ilastik/workflows.py
index bbe21e41..c5b1575f 100644
--- a/model_server/extensions/ilastik/workflows.py
+++ b/model_server/extensions/ilastik/workflows.py
@@ -43,7 +43,7 @@ def infer_px_then_ob_model(
ti = Timer()
ch = kwargs.get('channel')
- img = generate_file_accessor(fpi).get_one_channel_data(ch)
+ img = generate_file_accessor(fpi).get_one_channel_data(ch, mip=kwargs.get('mip', False))
ti.click('file_input')
px_map, _ = px_model.infer(img)
--
GitLab