From fa63053b2d77a8b8784a3f047b47ca77ece0b363 Mon Sep 17 00:00:00 2001
From: Christopher Rhodes <christopher.rhodes@embl.de>
Date: Wed, 27 Sep 2023 16:11:50 +0200
Subject: [PATCH] Started assembling object map in test setup function
---
extensions/chaeo/test_zstack.py | 10 ++++++++--
1 file changed, 8 insertions(+), 2 deletions(-)
diff --git a/extensions/chaeo/test_zstack.py b/extensions/chaeo/test_zstack.py
index 78baa64c..3a517907 100644
--- a/extensions/chaeo/test_zstack.py
+++ b/extensions/chaeo/test_zstack.py
@@ -2,13 +2,19 @@ import unittest
from extensions.chaeo.conf.testing import multichannel_zstack, pixel_classifier
from extensions.chaeo.zstack import build_stack_mask
-from model_server.accessors import InMemoryDataAccessor
+from model_server.accessors import generate_file_accessor, InMemoryDataAccessor
+from extensions.ilastik.models import IlastikObjectClassifierModel, IlastikPixelClassifierModel
class TestZStackDerivedDataProducts(unittest.TestCase):
def setUp(self) -> None:
# need test data incl obj map
- self.zstack =
+ self.zstack = generate_file_accessor(multichannel_zstack['path'])
+
+ pxmodel = IlastikPixelClassifierModel(
+ project_file=pixel_classifier['path']
+ )
+ self.pxmap = None
self.obmap = None
self.stack = None
--
GitLab