update metaSNP_distances.sh

metaSNP_distances.sh

@@ -37,6 +37,7 @@ dir_missing() {
         exit 1
 }
 
+DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
 IN_DIR="$1"
 OUT_DIR="$2"
 
@@ -48,6 +49,6 @@ OUT_DIR="$2"
 [ -d "$OUT_DIR" ] || dir_missing "$OUT_DIR"
 
 ## Commandlines:
-for i in $(ls $IN_DIR"/"*.freq); do echo "/g/bork3/home/costea/R-3.0.2/bin/R --no-save --file=src/computeDistances.R --args $i $OUT_DIR"; done
+for i in $(ls $IN_DIR"/"*.freq); do echo "/g/bork3/home/costea/R-3.0.2/bin/R --no-save --file=$DIR/src/computeDistances.R --args $i $OUT_DIR"; done
 
-exit
+exit
\ No newline at end of file