Commit 859f6b02 authored by Robin Erich Muench's avatar Robin Erich Muench
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Update README.md

parent fe97851d
......@@ -18,14 +18,10 @@ or [download](https://git.embl.de/rmuench/metaSNP/repository/archive.zip?ref=mas
Dependencies
============
* g++/c++
* Boost-1.53.0 or above
* samtools-1.19 or above
* htslib-1.0 or above (check samtools compatibility)
* Python-2.7 or above
......@@ -170,7 +166,7 @@ Caution: Perform this step seperately for individual SNPs and population SNPs.
within samples_of_interest (default: 0.5)
### b) Analysis:
> TODO: include R scripts for pairwise distance and subspecies computation
> TODO: include R scripts for computing pairwise distances and visualization
Example Tutorial
......@@ -217,6 +213,7 @@ Example Tutorial
TODO!
Basic usage (tools and scripts)
===============================
If you are interested in using the pipeline in a more manual way (for example the metaSNP caller stand alone) feel free to explore the src/ directory.
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