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Robin Erich Muench
metaSNV
Commits
859f6b02
Commit
859f6b02
authored
Jan 03, 2017
by
Robin Erich Muench
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Update README.md
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@@ -18,14 +18,10 @@ or [download](https://git.embl.de/rmuench/metaSNP/repository/archive.zip?ref=mas
Dependencies
============
*
g++/c++
*
Boost-1.53.0 or above
*
samtools-1.19 or above
*
htslib-1.0 or above (check samtools compatibility)
*
Python-2.7 or above
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@@ -170,7 +166,7 @@ Caution: Perform this step seperately for individual SNPs and population SNPs.
within samples_of_interest (default: 0.5)
### b) Analysis:
> TODO: include R scripts for pairwise distance and
subspecies comput
ation
> TODO: include R scripts for
computing
pairwise distance
s
and
visualiz
ation
Example Tutorial
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@@ -217,6 +213,7 @@ Example Tutorial
TODO!
Basic usage (tools and scripts)
===============================
If you are interested in using the pipeline in a more manual way (for example the metaSNP caller stand alone) feel free to explore the src/ directory.
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