Commit af5d11a4 authored by Robin Erich Muench's avatar Robin Erich Muench
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Update README.md

parent 78a22ff6
......@@ -39,11 +39,6 @@ a) Change the SAMTOOLS variable in the **SETUPFILE** to your path to Samtools.
http://samtools.sourceforge.net/
We assume that ``samtools`` is in your system path variable.
You can set this variable by putting the following line into your bashrc.
export PATH=/path/2/samtools:$PATH
b) Change the BOOST variable in the **SETUPFILE** to your path to BOOST library.
If you don't have boost, you can find boost [here](http://www.boost.org/users/download/):
......@@ -60,6 +55,18 @@ II. Compilation:
1) run `make` in the parent directory of metaSNP to compile qaTools and the snpCaller.
usage: make
III. Environmental Variables:
----------------
We assume the metaSNP parent directory, ``samtools`` and ``python`` in your system path variable.
You can set this variable temporarily by runing the following commands and permanently by putting these line into your .bashrc:
export PATH=/path/2/metaSNP:$PATH
export PATH=/path/2/python:$PATH
export PATH=/path/2/samtools:$PATH
Note: Replace '/path/2' with the corresponding global path.
Required Files:
......
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