Commit b48603d8 authored by Robin Erich Muench's avatar Robin Erich Muench
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Update README.md

parent 34ab4006
......@@ -66,7 +66,7 @@ Required Files:
===============
* **'all\_samples'** = a list of all BAM files, one /path/2/sample.bam per line (avoid duplicates!)
* **'ref_db'** = the reference database in fasta format (f.i. multi-sequence fasta)
* **'gen\_pos'** = a list with start and end positions for each sequence (format: sequence_id<tab>start<tab>end<\n>)
* **'gen\_pos'** = a list with start and end positions for each sequence (format: sequence_id start end)
* **TODO! Format 'db\_ann'** = [optional] a gene annotation file for the reference in [general feature format](http://www.ensembl.org/info/website/upload/gff.html) (GFF).
Workflow:
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