- 17 Mar, 2017 3 commits
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Robin Erich Muench authored
This reverts merge request !5
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Robin Erich Muench authored
Update script to make SNP caller commands: add command line options to pass to caller & mpileup. See merge request !5
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Robin Erich Muench authored
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- 16 Mar, 2017 2 commits
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Robin Erich Muench authored
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Robin Erich Muench authored
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- 15 Mar, 2017 5 commits
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Robin Erich Muench authored
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Robin Erich Muench authored
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Robin Erich Muench authored
Conflicts: src/computeGenomeCoverage.py
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Robin Erich Muench authored
DOC Spell check comments See merge request !6
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Luis Pedro Coelho authored
This code has fewer repetitions and is more readable
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- 06 Mar, 2017 1 commit
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Luis Pedro Coelho authored
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- 23 Feb, 2017 1 commit
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Thomas Sebastian Schmidt authored
- minimum coverage (“-c”, default 4) - minimum threhold (“-t”, default 4) - minimum frequency (“-p”, default 0.01) - maximum depth per position and sample for mpileup (“-d”, mirroring mpileup -d option, default 20,000) - rename debugging option from “-d” to “-D”
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- 15 Feb, 2017 1 commit
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Robin Erich Muench authored
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- 23 Jan, 2017 6 commits
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Paul Igor Costea authored
Make thresholds command line options instead of hard coded Also: - Fix a crash when -i option is missing - Add Makefile dependency See merge request !4
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Luis Pedro Coelho authored
Provide a warning to the user instead.
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Luis Pedro Coelho authored
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Luis Pedro Coelho authored
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Paul Igor Costea authored
Remove unused function See merge request !3
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Luis Pedro Coelho authored
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- 21 Jan, 2017 4 commits
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Robin Erich Muench authored
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Robin Erich Muench authored
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Paul Igor Costea authored
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Paul Igor Costea authored
Improve documentation See merge request !2
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- 20 Jan, 2017 1 commit
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Luis Pedro Coelho authored
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- 09 Jan, 2017 1 commit
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Robin Erich Muench authored
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- 08 Jan, 2017 4 commits
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Robin Erich Muench authored
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Robin Erich Muench authored
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Robin Erich Muench authored
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Robin Erich Muench authored
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- 04 Jan, 2017 1 commit
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Robin Erich Muench authored
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- 03 Jan, 2017 1 commit
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Robin Erich Muench authored
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- 02 Jan, 2017 1 commit
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Robin Erich Muench authored
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- 01 Jan, 2017 1 commit
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Robin Erich Muench authored
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- 16 Dec, 2016 3 commits
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Robin Erich Muench authored
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Robin Erich Muench authored
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Robin Erich Muench authored
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- 14 Dec, 2016 1 commit
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Robin Erich Muench authored
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- 11 Dec, 2016 1 commit
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Paul Costea authored
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- 30 Nov, 2016 1 commit
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Robin Erich Muench authored
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- 16 Nov, 2016 1 commit
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Robin Erich Muench authored
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