... | ... | @@ -60,7 +60,7 @@ Note: This is a final preparation of the table and does not have to be done in a |
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### Task D: Comparison of two biological replicates
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Table "raw.data.txt" contains two samples "A" and "B" of unknown properties. We want to compare if the biological replicates "worked". Plot your results.
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Table "raw.data.txt" contains two samples "A" and "B" of unknown properties including their "IDs" and "type". We want to compare if the biological replicates "worked". Plot your results.
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#### Input:
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- tab-separated table "raw.data.txt"
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... | ... | @@ -70,18 +70,4 @@ Table "raw.data.txt" contains two samples "A" and "B" of unknown properties. We |
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---
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### Optional: Sequencing pipeline
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This is optional!! Only continue if you finished the tasks above.
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This will be a question in the 1 on 1 session, you can prepare for it if you want.
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Question: How would you design a sequencing pipeline (e.g. RNASeq or other Sequencing you are familiar with.)
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Input: Illumina HiSeq 2000 fastq files, paired-end (or single-read if you are not familiar with paired-end sequencing).
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We will discuss this in person
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---
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Bset of luck. |
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Best of luck. |