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# Introduction to Bioinformatics with R and Bioconductor

## Schedule

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### Day 1, Monday, April 1st

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14:30 - 15:30 R refresher (Thea van Rossum)
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https://www.huber.embl.de/users/klaus/tidyverse_R_intro/R-lab.html
Covering: sections 1-5, 6.1, 6.4
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16:00 - 18:00 Data preprocessing  (Thea van Rossum)
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https://www.huber.embl.de/users/klaus/graphics_and_data_handling/graphics_and_data_handling.html
Covering: section 10
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18:00 - 19:00 Dinner (Canteen)

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### Day 2, Tuesday, April 2nd

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09:05 - 11:00 Graphics and Data Handling (Thea van Rossum + Florian Huber)
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https://www.huber.embl.de/users/klaus/graphics_and_data_handling/graphics_and_data_handling.html
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11:15 - 12:30 Data Visualization and Exploration (Florian Huber)
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13:30 - 15:30 Data Visualization and Exploration (Florian Huber)
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https://www.huber.embl.de/users/klaus/stat_methods_bioinf/graphics_bioinf.html
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16:00 - 18:00 Clustering and Dimension reduction (Florian Huber)
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18:00 - 19:00 Dinner (Canteen)

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### Day 3: Wednesday, April 3rd

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09.05 - 11:00 Hypothesis Testing (Florian Huber)
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https://www.huber.embl.de/users/klaus/teaching.html#hypothesis_testing_%E2%80%93_concise
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11:30 - 12:30 Hypothesis Testing (Florian Huber + Thomas Schwarzl)
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13:30 - 15:30 Introduction to Bioconductor (Thomas Schwarzl)
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https://github.com/Bioconductor/CSAMA/blob/2018/lecture/1-monday/lecture-01-bioc-intro.Rmd
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https://github.com/Bioconductor/CSAMA/tree/2018/lab/1-monday/lab-01-intro-to-r-bioc
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16:00 - 17:45 Statistical testing for high-throughput data (Thomas Schwarzl)
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https://git.embl.de/klaus/stat_methods_bioinf
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18:00 - Shuttle downtown
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19:00 - Dinner

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### Day 4: Thursday, April 4rd

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09:05 - 11:00 Analysis of high-throughput count data (Thomas Schwarzl)
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http://www-huber.embl.de/users/msmith/.msmb/tufte/ (Pw: mls)
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11:30 - 12:30 Data annotation (Thomas Schwarzl)
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13:30 - 15:30 Enrichment analysis (Thomas Schwarzl)
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