Commit 74588b5c authored by Thomas Schwarzl's avatar Thomas Schwarzl
Browse files

init introduction, intro to bioc, annotation, data

parent ab099b39
---
title: 'Introduction to Bioinformatics with R and Bioconductor'
author: "Thomas Schwarzl"
date: "26/3/2019"
output:
slidy_presentation:
theme: simplex
css: styles.css
header-includes:
- \newcommand{\bcenter}{\begin{center}}
- \newcommand{\ecenter}{\end{center}}
logo : img/embl_logo_small.png
biglogo : img/embl_logo.png
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)
```
## Welcome
<div class="midcenter" style="margin-left:-300px; margin-top:-200px;"><img src="img/Wikipedia_welcome_committee_topicon_graphic.PNG" width="600"></img></div>
## About me - Thomas Schwarzl
<img src="img/Thomas_Schwarzl.jpeg" height=150></img>
Positions | Locations
----------------------------------------- | -----------------------------
Chemical enigneer | HTL17 Vienna (Austria)
BSc in Bioinformatics | FH Hagenberg (Austria)
PhD in Bioinformatics and Systems Biology | UCD Dublin (Ireland)
PostDoc in Hentze and Huber lab | EMBL Heidelberg (Germany)
Staff Scientist Hentze and Huber lab | EMBL Heidelberg (Germany)
## About the (other) trainers
<div><img src="img/FlorianHuber.jpg" class="portrait" />
Florian Huber<br />
<span class="subtext">EIPOD PostDoc in Typas and Beltrao groups</span></div>
<br class="clear" />
<div><img src="img/TheaVanRossum.jpg" class="portrait" />Thea Van Rossum<br /><span class="subtext">PostDoc in Bork group</span></div>
<br class="clear" />
<div><img src="img/BerndKlaus.png" class="portrait" />(Bernd Klaus)<br/>
<span class="subtext">previously Biostatistician at EMBL </span></div>
<br class="clear" />
## About the teaching assistents
<div><img src="img/CharlesGirardot.jpeg" class="portrait" />Charles Girardot<br /><span class="subtext">Head of Genome Biology Computational Support group</span></div>
<br class="clear" />
<div><img src="img/SudeepSahadevan.jpeg" class="portrait" />Sudeep Sahadevan<br /><span class="subtext">Bioinformatics Engineer in Hentze group</span></div>
<br class="clear" />
## About the course organizers
<div><img src="img/ElisabethZielonka.jpg" class="portrait" />Elisabeth Zielonka<br /><span class="subtext">Scientific Organiser</span></div>
<br class="clear" />
<div><img src="img/Luca-Ruse.jpg" class="portrait" />George Luca-Ruse<br /><span class="subtext">Course Organiser</span></div>
<br class="clear" />
## What is bioinformatics
> - Data preprocessing
> - Exploration
> - Statistical analysis
> - Visualisation
## Course program
> - *Monday* - R refresher / Data processing
> - *Tuesday* - Data processing Visualisation and Exploration
> - *Wednesday* - Hypothesis testing and Statistical analyses
> - *Thursday* - Applied analyses
## Exact program and house rules
--> to Elli
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