From 51157d97a4601cf61244c630b6b2e345594a1ee4 Mon Sep 17 00:00:00 2001
From: Thomas Schwarzl <thomas.schwarzl@embl.de>
Date: Thu, 21 Jan 2016 12:38:00 +0100
Subject: [PATCH] added reporting example

---
 .gitignore          |  2 ++
 02-report/Snakefile | 41 +++++++++++++++++++++++++++++++++++++++++
 2 files changed, 43 insertions(+)
 create mode 100644 .gitignore
 create mode 100644 02-report/Snakefile

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..e2ecfaf
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+.snakemake
+
diff --git a/02-report/Snakefile b/02-report/Snakefile
new file mode 100644
index 0000000..a89a68e
--- /dev/null
+++ b/02-report/Snakefile
@@ -0,0 +1,41 @@
+from snakemake.utils import report
+
+rule all:
+	input:
+		"extract.txt"
+
+rule summarize:
+	input:
+		"A.fasta",
+		"B.fasta"
+	output:
+		"sum.txt"
+	shell:
+		"wc -c {input} > {output}"
+
+rule extract:
+	input:
+		"sum.txt"
+	output:
+		"extract.txt"
+	shell:
+		"cut -f7 -d ' ' {input} > {output}"
+
+rule clean:
+	shell:
+		"rm extract.txt sum.txt"
+
+
+rule report:
+	input:
+		T1="sum.txt"
+	output:
+		html="report.html"
+	run:
+		report("""
+	========
+	title
+	========
+	
+	Something  {input.T1}
+	""", output.html, metadata="Thomas Schwarzl", **input)
-- 
GitLab