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Thomas Schwarzl
snakemake-tutorial
Commits
7c53db8f
Commit
7c53db8f
authored
Jan 19, 2016
by
Thomas Schwarzl
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01-Snakemake-introduction.pptx
01-Snakemake-introduction.pptx
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01-example/A.fasta
01-example/A.fasta
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01-example/B.fasta
01-example/B.fasta
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01-example/Snakefile
01-example/Snakefile
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01-Snakemake-introduction.pptx
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01-example/A.fasta
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>A
ACATATAGAGATATAT
01-example/B.fasta
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>B
ACACAATCTATCATCTACTACGACGAGCGACGAGCGACGGACGAGGGTATCTATCTAGCAGC
01-example/Snakefile
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7c53db8f
rule all:
input:
"extract.txt"
rule summarize:
input:
"A.fasta",
"B.fasta"
output:
"sum.txt"
shell:
"wc -c {input} > {output}"
rule extract:
input:
"sum.txt"
output:
"extract.txt"
shell:
"cut -f7 -d ' ' {input} > {output}"
rule clean:
shell:
"rm extract.txt sum.txt"
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