From d42beaabeace6bba4e1cbde7f9fa47c102fd36fe Mon Sep 17 00:00:00 2001
From: Malvika Sharan <malvika.sharan@embl.de>
Date: Wed, 9 Nov 2016 07:50:12 +0100
Subject: [PATCH] Update README.md
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README.md | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/README.md b/README.md
index be4af7f..3c411f2 100644
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*Lecture (Toby):* Secondary vs tertiary structure vs protein complexes
-1. Protein Structures: Toby
+1. Protein Structures - Toby
- Structure database: PDB at [RCSB](http://www.rcsb.org/pdb/home/home.do)
- [Structure visualization](https://docs.google.com/document/d/19gtIv5fqqkEP1sJyIaCzJzMrIPKTSnT0owmk093w2C8/pub)
- Chimera
-2. Structure prediction: Malvika
+2. Structure prediction - Malvika
- [Secondary and Tertiary structure prediction](https://git.embl.de/sharan/protein-bioinformatics-nov-2016/blob/master/TeachingMaterials/tertiary_structure_pred.md)
3. [Domain databases](https://docs.google.com/document/d/1v7JM9i7yANHasTdpLFZIx_oKIx5K-t0S2o5GnDbXKD0/edit): Manjeet
- [SMART](http://smart.embl-heidelberg.de/)
- [Pfam](http://pfam.xfam.org/)
- [Superfamily](http://supfam.org/SUPERFAMILY/)
- InterPro & InterProScan
-4. [Prediction of transmembrane helices in proteins](https://docs.google.com/document/d/1v7JM9i7yANHasTdpLFZIx_oKIx5K-t0S2o5GnDbXKD0/edit): Manjeet
+4. [Prediction of transmembrane helices in proteins](https://docs.google.com/document/d/1v7JM9i7yANHasTdpLFZIx_oKIx5K-t0S2o5GnDbXKD0/edit) - Manjeet
- [TMHMM](http://www.cbs.dtu.dk/services/TMHMM/)
- [IUPRED](http://iupred.enzim.hu/) and [Anchor](http://anchor.enzim.hu/)
-5. Intrinsically disordered region: Marc
+5. Intrinsically disordered region - Marc
- ELM
- DISPROT
-6. Protein-protein interaction: Michael
+6. Protein-protein interaction - Michael
- STRING and STITCH
- Intact
- MINT
7. Motif visualization:
- - Weblogo (Malvika)
- - MEME (Malvika)
- - [Jalview Alignment Viewer](https://docs.google.com/document/d/1Rd7KiqndSW3xqbW_GJc6gfU1dRkjoxR00gCi97F9VMU/pub) (Toby)
+ - [Weblogo and MEME](https://git.embl.de/sharan/protein-bioinformatics-nov-2016/blob/master/TeachingMaterials/motif_visualization.md) - Malvika
+ - [Jalview Alignment Viewer](https://docs.google.com/document/d/1Rd7KiqndSW3xqbW_GJc6gfU1dRkjoxR00gCi97F9VMU/pub) - Toby
### Important references
- http://www.sciencedirect.com/science/book/9788131222973
--
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