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Toby Hodges
software-carpentry-nov2015
Commits
6ad36cca
Commit
6ad36cca
authored
Oct 13, 2017
by
Toby Hodges
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improved heading levels
parent
bca040ce
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README.md
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6ad36cca
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@@ -9,7 +9,7 @@ Download or `git clone` this repository and then follow the instructions below.
## The Exercise
###
#
Introduction
### Introduction
__Before__
you look at the sequence files in this repository, open the script in
your favourite editor and discuss ways in which it could be improved. Things to
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@@ -22,17 +22,17 @@ think about might include
-
What problems can you foresee, if the script were to be shared with others or
applied to a different sequence file?
###
#
First Application
### First Application
Now run the script on
`example_sequences1.fasta`
-
Has this made you notice any more improvements that could be made?
###
#
Exposure to The Real World
### Exposure to The Real World
What about if you run the script on
`example_sequences2.fasta`
? Does this help you
to notice any additional improvements that could be made?
###
#
Improving the Script
### Improving the Script
Make a copy of the script (or start from scratch if you prefer!) and make as
many improvements to the code as you think are necessary to make it
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@@ -47,7 +47,7 @@ many improvements to the code as you think are necessary to make it
object classes to work with sequence objects. Please avoid using the library for
this exercise.)
###
#
Adapting the Script
### Adapting the Script
If you have time, try to further adapt the script to expand its functionality
such that, given a file of protein sequences instead, it will produce counts of
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