From 0729f7512f9505373ec74bda65f96b931e017245 Mon Sep 17 00:00:00 2001
From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de>
Date: Mon, 30 Sep 2019 10:14:18 +0200
Subject: [PATCH] Rename ato3 to ato2
---
...-1-whole-ato3-MED.xml => prospr-6dpf-1-whole-ato2-MED.xml} | 2 +-
.../tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv | 4 +++-
2 files changed, 4 insertions(+), 2 deletions(-)
rename data/0.5.4/images/{prospr-6dpf-1-whole-ato3-MED.xml => prospr-6dpf-1-whole-ato2-MED.xml} (94%)
diff --git a/data/0.5.4/images/prospr-6dpf-1-whole-ato3-MED.xml b/data/0.5.4/images/prospr-6dpf-1-whole-ato2-MED.xml
similarity index 94%
rename from data/0.5.4/images/prospr-6dpf-1-whole-ato3-MED.xml
rename to data/0.5.4/images/prospr-6dpf-1-whole-ato2-MED.xml
index 66a646d..d70f292 100644
--- a/data/0.5.4/images/prospr-6dpf-1-whole-ato3-MED.xml
+++ b/data/0.5.4/images/prospr-6dpf-1-whole-ato2-MED.xml
@@ -2,7 +2,7 @@
<BasePath type="relative">.</BasePath>
<SequenceDescription>
<ImageLoader format="bdv.hdf5">
- <hdf5 type="relative">prospr-6dpf-1-whole-ato3-MED.h5</hdf5>
+ <hdf5 type="relative">prospr-6dpf-1-whole-ato2-MED.h5</hdf5>
</ImageLoader>
<ViewSetups>
<Attributes name="channel">
diff --git a/data/0.5.4/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv b/data/0.5.4/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv
index aa9a65d..cefbe14 100644
--- a/data/0.5.4/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv
+++ b/data/0.5.4/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv
@@ -1,4 +1,6 @@
-label_id ENR1-PGAM ANPRB COE AP2 ANPRA ENR13-NDUS1 AllCR2 AllCR1 Beta3 Dach DopaRD2 Brn124 ASCb Ash ENR10-UPP ENR16-ODO2 ENR20-PPIB ENR2-RYR2 AChE ENR29-USP9X Brn3a ENR34-MTHFSD ENR32-GRIK3 ENR4-SND1 ENR25-Synaptopodin BarH1 BAIAP Calmodulin Cal2 Bmpr1 ENR64-PSMF1 Arx ChAT DbhLike ENR12-UNC22 Chx10 ENR19-FboxLike ENR22-CO1A1 ENR3-JKIP3 ENR31-Leucin-rich ENR30-CCG5 ENR54-Boule-like ENR39-RPC2 ENR46-Calexcitin2 ENR57-Junctophilin1 ENR69-BCA1 ENR6-Nucleolin ENR62-NB5R3 ENR71-Patched ENR8-Non-muscle-MHC ENR9-NOE1 Edu42to48 FOR ElaV FVRI FoxN4 FoxD3 GAD GCB GCD GPCR2 GPCR210 GPCR203 Glt1 GPCR209 GPPCR21 GlyT GPCR32 Gata123 Grm7 GnRH HCN1 GnrhR Gucy HNF6 Hb9 Hand Hox4 Hox7 Hr38 Lmo4 Lmx1 Kv33e Isl Lhx15 Kv33b Lhx2 Lhx3 Loc8913nt MRLC2 Loc28250 Loc77859 Maf Loc5285ct MHCL4 Mitf Munc22 NMDAR NOV15-OLM2A NOV29-NOV29 NOV45-TMTC3 NOV50-GDPD1 NOV2-NOV2 NOV18-CEPU1 NOV1-globin-like NOV52-KANL3 NOV6-Stathmin NPR1a Netrin NeuroD Ngb Olig P56 PCDH15 PDF PLCg Pax258 Pax6 Pde9 Pea3 Phc2 Phox2b Pikachu Prdm8 Prox PitxB RIMS Rab3 Ptf1 Sema2 Robo Scn8aa Sox2 Slit Sim1 Sox4 Sp8 SoxB2 SoxB12 Syt12 Syta Syt Syt7 TH TIMP Tal Tbh TRPV4 TRPV5 Tbx20 TrpH TrpV Twist UNCS VAChT VAT1L VGluT VegfR ascI ascII Wnt5 ato3 Wnt16 asicalpha bsx dbx1 cnga catL delta dlx eve eya fezf hox1 gpb irx2546 gsx lbx1b irx6 mecom lhx6 msx muncB neog nAchR ngn nk21 nk22 nk6 nompc3 ntrps pkd1 paraxis otp pkd2 rx six12 sert tlx six4 uncx trk edu4to5at6dpf edu5to6at6dpf edu3to4at6dpf
+label_id ENR1-PGAM ANPRB COE AP2 ANPRA ENR13-NDUS1 AllCR2 AllCR1 Beta3 Dach DopaRD2 Brn124 ASCb Ash ENR10-UPP ENR16-ODO2 ENR20-PPIB ENR2-RYR2 AChE ENR29-USP9X Brn3a ENR34-MTHFSD ENR32-GRIK3 ENR4-SND1 ENR25-Synaptopodin BarH1 BAIAP Calmodulin Cal2 Bmpr1 ENR64-PSMF1 Arx ChAT DbhLike ENR12-UNC22 Chx10 ENR19-FboxLike ENR22-CO1A1 ENR3-JKIP3 ENR31-Leucin-rich ENR30-CCG5 ENR54-Boule-like ENR39-RPC2 ENR46-Calexcitin2 ENR57-Junctophilin1
+ENR69-BCA1 ENR6-Nucleolin ENR62-NB5R3 ENR71-Patched ENR8-Non-muscle-MHC ENR9-NOE1 Edu42to48 FOR ElaV FVRI FoxN4 FoxD3 GAD GCB GCD GPCR2 GPCR210 GPCR203 Glt1 GPCR209 GPPCR21 GlyT GPCR32 Gata123 Grm7 GnRH HCN1 GnrhR Gucy HNF6 Hb9 Hand Hox4 Hox7 Hr38 Lmo4 Lmx1 Kv33e Isl Lhx15 Kv33b Lhx2 Lhx3 Loc8913nt MRLC2 Loc28250 Loc77859 Maf Loc5285ct MHCL4 Mitf Munc22 NMDAR NOV15-OLM2A NOV29-NOV29 NOV45-TMTC3
+NOV50-GDPD1 NOV2-NOV2 NOV18-CEPU1 NOV1-globin-like NOV52-KANL3 NOV6-Stathmin NPR1a Netrin NeuroD Ngb Olig P56 PCDH15 PDF PLCg Pax258 Pax6 Pde9 Pea3 Phc2 Phox2b Pikachu Prdm8 Prox PitxB RIMS Rab3 Ptf1 Sema2 Robo Scn8aa Sox2 Slit Sim1 Sox4 Sp8 SoxB2 SoxB12 Syt12 Syta Syt Syt7 TH TIMP Tal Tbh TRPV4 TRPV5 Tbx20 TrpH TrpV Twist UNCS VAChT VAT1L VGluT VegfR ascI ascII Wnt5 ato2 Wnt16 asicalpha bsx dbx1 cnga catL delta dlx eve eya fezf hox1 gpb irx2546 gsx lbx1b irx6 mecom lhx6 msx muncB neog nAchR ngn nk21 nk22 nk6 nompc3 ntrps pkd1 paraxis otp pkd2 rx six12 sert tlx six4 uncx trk edu4to5at6dpf edu5to6at6dpf edu3to4at6dpf
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