From 0e3c656ad5ab85155949427a1adbb501d3d05950 Mon Sep 17 00:00:00 2001
From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de>
Date: Mon, 14 Oct 2019 16:25:09 +0200
Subject: [PATCH] Add initial version of xray data
---
.../images/prospr-6dpf-1-whole-AChE-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ANPRA-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ANPRB-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-AP2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ASCb-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-AllCR1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-AllCR2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Arx-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Ash-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-BAIAP-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-BarH1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Beta3-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Bmpr1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Brn124-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Brn3a-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-COE-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Cal2-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Calmodulin-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ChAT-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Chx10-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Dach-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-DbhLike-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-DopaRD2-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR1-PGAM-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR10-UPP-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR12-UNC22-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR13-NDUS1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR16-ODO2-MED.xml | 39 +++++++++++++++++++
...prospr-6dpf-1-whole-ENR19-FboxLike-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR2-RYR2-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR20-PPIB-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR22-CO1A1-MED.xml | 39 +++++++++++++++++++
...pr-6dpf-1-whole-ENR25-Synaptopodin-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR29-USP9X-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR3-JKIP3-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR30-CCG5-MED.xml | 39 +++++++++++++++++++
...spr-6dpf-1-whole-ENR31-Leucin-rich-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR32-GRIK3-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR34-MTHFSD-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR39-RPC2-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR4-SND1-MED.xml | 39 +++++++++++++++++++
...spr-6dpf-1-whole-ENR46-Calexcitin2-MED.xml | 39 +++++++++++++++++++
...ospr-6dpf-1-whole-ENR54-Boule-like-MED.xml | 39 +++++++++++++++++++
...r-6dpf-1-whole-ENR57-Junctophilin1-MED.xml | 39 +++++++++++++++++++
...prospr-6dpf-1-whole-ENR6-Nucleolin-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR62-NB5R3-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR64-PSMF1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR69-BCA1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR71-Patched-MED.xml | 39 +++++++++++++++++++
...r-6dpf-1-whole-ENR8-Non-muscle-MHC-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-ENR9-NOE1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Edu42to48-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ElaV-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-FOR-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-FVRI-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-FoxD3-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-FoxN4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GAD-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GCB-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GCD-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GPCR2-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-GPCR203-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-GPCR209-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-GPCR210-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GPCR32-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-GPPCR21-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Gata123-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Glt1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GlyT-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GnRH-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-GnrhR-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Grm7-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Gucy-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-HCN1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-HNF6-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Hand-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Hb9-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Hox4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Hox7-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Hr38-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Isl-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Kv33b-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Kv33e-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Lhx15-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Lhx2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Lhx3-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Lmo4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Lmx1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Loc28250-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Loc5285ct-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Loc77859-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Loc8913nt-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-MHCL4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-MRLC2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Maf-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Mitf-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Munc22-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-NMDAR-MED.xml | 39 +++++++++++++++++++
...ospr-6dpf-1-whole-NOV1-globin-like-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV15-OLM2A-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV18-CEPU1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV2-NOV2-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV29-NOV29-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV45-TMTC3-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV50-GDPD1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV52-KANL3-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-NOV6-Stathmin-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-NPR1a-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Netrin-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-NeuroD-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Ngb-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Olig-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-P56-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-PCDH15-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-PDF-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-PLCg-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Pax258-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Pax6-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Pde9-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Pea3-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Phc2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Phox2b-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-Pikachu-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-PitxB-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Prdm8-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Prox-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Ptf1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-RIMS-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Rab3-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Robo-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Scn8aa-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Sema2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Sim1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Slit-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Sox2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Sox4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-SoxB12-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-SoxB2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Sp8-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Syt-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Syt12-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Syt7-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Syta-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-TH-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-TIMP-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-TRPV4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-TRPV5-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Tal-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Tbh-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Tbx20-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-TrpH-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-TrpV-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Twist-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-UNCS-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-VAChT-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-VAT1L-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-VGluT-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-VegfR-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Wnt16-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-Wnt5-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ascI-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ascII-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-asicalpha-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ato2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-bsx-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-catL-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-cnga-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-dbx1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-delta-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-dlx-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-edu3to4at6dpf-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-edu4to5at6dpf-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-edu5to6at6dpf-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-eve-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-eya-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-fezf-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-gpb-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-gsx-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-hox1-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-irx2546-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-irx6-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-lbx1b-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-lhx6-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-mecom-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-msx-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-muncB-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-nAchR-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-neog-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ngn-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-nk21-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-nk22-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-nk6-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-nompc3-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-ntrps-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-otp-MED.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-paraxis-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-pkd1-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-pkd2-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-rx-MED.xml | 39 +++++++++++++++++++
...rospr-6dpf-1-whole-segmented-AllGlands.xml | 39 +++++++++++++++++++
...-6dpf-1-whole-segmented-CrypticSegment.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-segmented-Glands.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-segmented-Head.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-segmented-PNS.xml | 39 +++++++++++++++++++
...spr-6dpf-1-whole-segmented-ProSPr6-Ref.xml | 39 +++++++++++++++++++
...prospr-6dpf-1-whole-segmented-Pygidium.xml | 39 +++++++++++++++++++
...pr-6dpf-1-whole-segmented-RestOfAnimal.xml | 39 +++++++++++++++++++
...rospr-6dpf-1-whole-segmented-Stomodeum.xml | 39 +++++++++++++++++++
.../prospr-6dpf-1-whole-segmented-VNC.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-sert-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-six12-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-six4-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-tlx-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-trk-MED.xml | 39 +++++++++++++++++++
.../images/prospr-6dpf-1-whole-uncx-MED.xml | 39 +++++++++++++++++++
.../sbem-6dpf-1-whole-mask-extrapolated.xml | 39 +++++++++++++++++++
.../images/sbem-6dpf-1-whole-mask-inside.xml | 39 +++++++++++++++++++
.../images/sbem-6dpf-1-whole-mask-outside.xml | 39 +++++++++++++++++++
.../images/sbem-6dpf-1-whole-mask-resin.xml | 39 +++++++++++++++++++
.../images/sbem-6dpf-1-whole-raw.xml | 39 +++++++++++++++++++
.../images/sbem-6dpf-1-whole-xray.xml | 39 +++++++++++++++++++
data/1.0.0-pre/misc/bookmarks.json | 6 +++
...m-6dpf-1-whole-segmented-cells-labels.json | 1 +
...m-6dpf-1-whole-segmented-cilia-labels.json | 1 +
...-6dpf-1-whole-segmented-nuclei-labels.json | 1 +
.../prospr-6dpf-1-whole_meds_all_genes.xml | 8 ++++
...ospr-6dpf-1-whole-virtual-cells-labels.xml | 39 +++++++++++++++++++
...dpf-1-whole-segmented-ariande-neuropil.xml | 39 +++++++++++++++++++
...m-6dpf-1-whole-segmented-cats-neuropil.xml | 39 +++++++++++++++++++
...em-6dpf-1-whole-segmented-cells-labels.xml | 39 +++++++++++++++++++
...dpf-1-whole-segmented-chromatin-labels.xml | 39 +++++++++++++++++++
...em-6dpf-1-whole-segmented-cilia-labels.xml | 39 +++++++++++++++++++
.../sbem-6dpf-1-whole-segmented-muscle.xml | 39 +++++++++++++++++++
...m-6dpf-1-whole-segmented-nuclei-labels.xml | 39 +++++++++++++++++++
...m-6dpf-1-whole-segmented-tissue-labels.xml | 39 +++++++++++++++++++
.../sbem-6dpf-1-whole-traces-labels.xml | 39 +++++++++++++++++++
.../default.csv | 1 +
.../profile_clust_curated.csv | 1 +
.../cells_to_nuclei.csv | 1 +
.../default.csv | 1 +
.../extrapolated_intensity_correction.csv | 1 +
.../genes.csv | 1 +
.../morphology.csv | 1 +
.../regions.csv | 1 +
.../vc_assignments.csv | 1 +
.../default.csv | 1 +
.../cell_id_mapping.csv | 1 +
.../default.csv | 1 +
.../morphology.csv | 1 +
.../default.csv | 1 +
.../extrapolated_intensity_correction.csv | 1 +
.../morphology.csv | 1 +
.../default.csv | 1 +
.../default.csv | 1 +
data/versions.json | 2 +-
update_major.py | 7 ++--
256 files changed, 9049 insertions(+), 4 deletions(-)
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-AChE-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-ANPRA-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-ANPRB-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-AP2-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-ASCb-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-AllCR1-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-AllCR2-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Arx-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Ash-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-BAIAP-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-BarH1-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Beta3-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Bmpr1-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Brn124-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Brn3a-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-COE-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Cal2-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Calmodulin-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-ChAT-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Chx10-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-Dach-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-DbhLike-MED.xml
create mode 100644 data/1.0.0-pre/images/prospr-6dpf-1-whole-DopaRD2-MED.xml
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create mode 120000 data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv
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index 0000000..db76233
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new file mode 100644
index 0000000..8e10e1b
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new file mode 100644
index 0000000..56e5bdb
--- /dev/null
+++ b/data/1.0.0-pre/images/prospr-6dpf-1-whole-six4-MED.xml
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new file mode 100644
index 0000000..eac7a1f
--- /dev/null
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new file mode 100644
index 0000000..89b6b44
--- /dev/null
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diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-uncx-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-uncx-MED.xml
new file mode 100644
index 0000000..cbc2161
--- /dev/null
+++ b/data/1.0.0-pre/images/prospr-6dpf-1-whole-uncx-MED.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
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diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-extrapolated.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-extrapolated.xml
new file mode 100644
index 0000000..c508249
--- /dev/null
+++ b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-extrapolated.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
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new file mode 100644
index 0000000..9c923a7
--- /dev/null
+++ b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-inside.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
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diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-outside.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-outside.xml
new file mode 100644
index 0000000..5f3be7f
--- /dev/null
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@@ -0,0 +1,39 @@
+<SpimData version="0.2">
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diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-resin.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-resin.xml
new file mode 100644
index 0000000..f71df8d
--- /dev/null
+++ b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-resin.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
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diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-raw.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-raw.xml
new file mode 100644
index 0000000..fcf8dfd
--- /dev/null
+++ b/data/1.0.0-pre/images/sbem-6dpf-1-whole-raw.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
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new file mode 100644
index 0000000..2fd965b
--- /dev/null
+++ b/data/1.0.0-pre/images/sbem-6dpf-1-whole-xray.xml
@@ -0,0 +1,39 @@
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diff --git a/data/1.0.0-pre/misc/bookmarks.json b/data/1.0.0-pre/misc/bookmarks.json
new file mode 100644
index 0000000..23da1cb
--- /dev/null
+++ b/data/1.0.0-pre/misc/bookmarks.json
@@ -0,0 +1,6 @@
+{"Nephridia1": {"Position": [96.60291585539845,146.7972323927267,185.4679511451342]},
+ "Nephridia1-end-of-cilia": {
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+ "Left eye": {"Position": [177.0, 218.0, 67.0]}
+}
diff --git a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json
new file mode 120000
index 0000000..e78dd47
--- /dev/null
+++ b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json
@@ -0,0 +1 @@
+../../0.6.0/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json
\ No newline at end of file
diff --git a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json
new file mode 120000
index 0000000..c853ef5
--- /dev/null
+++ b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json
@@ -0,0 +1 @@
+../../0.6.0/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json
\ No newline at end of file
diff --git a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json
new file mode 120000
index 0000000..0a02973
--- /dev/null
+++ b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json
@@ -0,0 +1 @@
+../../0.6.0/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json
\ No newline at end of file
diff --git a/data/1.0.0-pre/misc/prospr-6dpf-1-whole_meds_all_genes.xml b/data/1.0.0-pre/misc/prospr-6dpf-1-whole_meds_all_genes.xml
new file mode 100644
index 0000000..c7c634c
--- /dev/null
+++ b/data/1.0.0-pre/misc/prospr-6dpf-1-whole_meds_all_genes.xml
@@ -0,0 +1,8 @@
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diff --git a/data/1.0.0-pre/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.xml b/data/1.0.0-pre/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.xml
new file mode 100644
index 0000000..07b8e7c
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.xml
@@ -0,0 +1,39 @@
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diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml
new file mode 100644
index 0000000..2b06347
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-ariande-neuropil.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>2750 2592 2854</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.1 0.1 0.1</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.1 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.1 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml
new file mode 100644
index 0000000..4ea187a
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-cats-neuropil.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>550 518 570</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.5 0.5 0.5</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml
new file mode 100644
index 0000000..92138f2
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>13750 12958 11416</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.02 0.02 0.025</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.02 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.025 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml
new file mode 100644
index 0000000..25dd2b4
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-chromatin-labels.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>13750 12958 11416</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.02 0.02 0.025</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.02 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.025 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml
new file mode 100644
index 0000000..075cda5
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../0.5.3/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>27499 25916 11416</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.01 0.01 0.025</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.01 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.025 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml
new file mode 100644
index 0000000..26ba713
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>2750 2592 2854</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.1 0.1 0.1</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.1 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.1 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml
new file mode 100644
index 0000000..f818c38
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>3438 3240 2854</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.08 0.08 0.1</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.1 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml
new file mode 100644
index 0000000..390dbdb
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-tissue-labels.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>1</id>
+ <name>1</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>channel 1</name>
+ <size>3438 3240 2854</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.08 0.08 0.1</size>
+ </voxelSize>
+ <attributes>
+ <channel>1</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
+ <first>0</first>
+ <last>0</last>
+ </Timepoints>
+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
+ <ViewTransform type="affine">
+ <affine>0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.1 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-traces-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-traces-labels.xml
new file mode 100644
index 0000000..e3442cd
--- /dev/null
+++ b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-traces-labels.xml
@@ -0,0 +1,39 @@
+<SpimData version="0.2">
+ <BasePath type="relative">.</BasePath>
+ <SequenceDescription>
+ <ImageLoader format="bdv.hdf5">
+ <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-traces-labels.h5</hdf5>
+ </ImageLoader>
+ <ViewSetups>
+ <Attributes name="channel">
+ <Channel>
+ <id>0</id>
+ <name>0</name>
+ </Channel>
+ </Attributes>
+ <ViewSetup>
+ <id>0</id>
+ <name>Setup0</name>
+ <size>3438 3240 2854</size>
+ <voxelSize>
+ <unit>micrometer</unit>
+ <size>0.08 0.08 0.1</size>
+ </voxelSize>
+ <attributes>
+ <channel>0</channel>
+ </attributes>
+ </ViewSetup>
+ </ViewSetups>
+ <Timepoints type="range">
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+ </SequenceDescription>
+ <ViewRegistrations>
+ <ViewRegistration setup="0" timepoint="0">
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+ <affine>0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.1 0.0</affine>
+ </ViewTransform>
+ </ViewRegistration>
+ </ViewRegistrations>
+</SpimData>
diff --git a/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv b/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv
new file mode 120000
index 0000000..1147ca6
--- /dev/null
+++ b/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv b/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv
new file mode 120000
index 0000000..97673cf
--- /dev/null
+++ b/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv
new file mode 120000
index 0000000..1239688
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv
new file mode 120000
index 0000000..5bda82c
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv
new file mode 120000
index 0000000..69eba1e
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv
new file mode 120000
index 0000000..e6d27ac
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv
new file mode 120000
index 0000000..d9bcb2f
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv
new file mode 120000
index 0000000..da93383
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/vc_assignments.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/vc_assignments.csv
new file mode 120000
index 0000000..79e496b
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/vc_assignments.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/vc_assignments.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv
new file mode 120000
index 0000000..6bad2da
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv
new file mode 120000
index 0000000..f6e7e17
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv
new file mode 120000
index 0000000..8642ea7
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv
new file mode 120000
index 0000000..c331c55
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv
new file mode 120000
index 0000000..ce47063
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv
new file mode 120000
index 0000000..e5dd2bb
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv
new file mode 120000
index 0000000..64d86e4
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv
new file mode 120000
index 0000000..7ab4da3
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv
\ No newline at end of file
diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-traces-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-traces-labels/default.csv
new file mode 120000
index 0000000..e0cf8a1
--- /dev/null
+++ b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-traces-labels/default.csv
@@ -0,0 +1 @@
+../../../0.6.0/tables/sbem-6dpf-1-whole-traces-labels/default.csv
\ No newline at end of file
diff --git a/data/versions.json b/data/versions.json
index 48ac02e..1a075b5 100644
--- a/data/versions.json
+++ b/data/versions.json
@@ -1 +1 @@
-["0.0.0", "0.0.1", "0.1.0", "0.1.1", "0.2.0", "0.2.1", "0.3.0", "0.3.1", "0.4.0", "0.5.0", "0.5.1", "0.5.2", "0.5.3", "0.5.4", "0.5.5", "0.6.0"]
\ No newline at end of file
+["0.0.0", "0.0.1", "0.1.0", "0.1.1", "0.2.0", "0.2.1", "0.3.0", "0.3.1", "0.4.0", "0.5.0", "0.5.1", "0.5.2", "0.5.3", "0.5.4", "0.5.5", "0.6.0", "1.0.0-pre"]
diff --git a/update_major.py b/update_major.py
index 2ce113d..1995752 100755
--- a/update_major.py
+++ b/update_major.py
@@ -33,10 +33,11 @@ def update_major(new_data_dict, target='slurm', max_jobs=250):
"""
for source, new_data in new_data_dict.items():
- add_source(source)
+ sname, sstage, sid, sregion = source.split('-')
+ add_source(sname, sstage, int(sid), sregion)
check_inputs(new_data, check_source=False)
- # increase the minor (middle digit) release tag
+ # increase the major (first digit) release tag
tag, new_tag = get_tags()
print("Updating platy browser from", tag, "to", new_tag)
@@ -49,7 +50,7 @@ def update_major(new_data_dict, target='slurm', max_jobs=250):
copy_release_folder(folder, new_folder)
# add the new sources and new data
- for source, new_data in new_data.items():
+ for source, new_data in new_data_dict.items():
for data in new_data:
add_data(data, new_folder, target, max_jobs,
source=source)
--
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