diff --git a/scripts/attributes/genes.py b/scripts/attributes/genes.py index a7a77ec5ede6541f3ae6d52e23f5705ae2343813..49822abd9f09a4fa3dc0180b1b5837e77a418c71 100755 --- a/scripts/attributes/genes.py +++ b/scripts/attributes/genes.py @@ -52,10 +52,7 @@ def get_cell_expression(segm_data, all_genes): genes_in_cell = all_genes[tuple([slice(0,None),] + list(bb))] for gene in range(num_genes): gene_expr = genes_in_cell[gene] - try: - gene_expr_sum = np.sum(gene_expr[cell_masked]>0) - except: - print(gene_expr.shape, cell_masked.shape) + gene_expr_sum = np.sum(gene_expr[cell_masked]>0) cells_expression[cell_idx, gene] = gene_expr_sum / cell_size return labels, cells_expression