From 2199c1437fc8546706548111e67c7ff258c79dac Mon Sep 17 00:00:00 2001
From: vzinche <valentyna.zinchenko@embl.de>
Date: Fri, 7 Jun 2019 10:25:35 +0200
Subject: [PATCH] cleaned up
---
scripts/attributes/genes.py | 5 +----
1 file changed, 1 insertion(+), 4 deletions(-)
diff --git a/scripts/attributes/genes.py b/scripts/attributes/genes.py
index a7a77ec..49822ab 100755
--- a/scripts/attributes/genes.py
+++ b/scripts/attributes/genes.py
@@ -52,10 +52,7 @@ def get_cell_expression(segm_data, all_genes):
genes_in_cell = all_genes[tuple([slice(0,None),] + list(bb))]
for gene in range(num_genes):
gene_expr = genes_in_cell[gene]
- try:
- gene_expr_sum = np.sum(gene_expr[cell_masked]>0)
- except:
- print(gene_expr.shape, cell_masked.shape)
+ gene_expr_sum = np.sum(gene_expr[cell_masked]>0)
cells_expression[cell_idx, gene] = gene_expr_sum / cell_size
return labels, cells_expression
--
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