From 54162cfe44b8112dbe64835d8e49b2a301de6a78 Mon Sep 17 00:00:00 2001 From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de> Date: Thu, 6 Feb 2020 19:48:17 +0100 Subject: [PATCH] Remove 1.0.0-pre --- .../images/prospr-6dpf-1-whole-AChE-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-ANPRA-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-ANPRB-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-AP2-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-ASCb-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-AllCR1-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-AllCR2-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-Arx-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-Ash-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-BAIAP-MED.xml | 39 ------------------- .../images/prospr-6dpf-1-whole-BarH1-MED.xml | 39 ------------------- 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-AChE-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-AChE-MED.xml deleted file mode 100644 index 92f6497..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-AChE-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-AChE-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" 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d14d3dc..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ASCb-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ASCb-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-AllCR1-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-AllCR1-MED.xml deleted file mode 100644 index 9dc2d95..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-AllCR1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-AllCR1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-BAIAP-MED.xml deleted file mode 100644 index fe8b81d..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-BAIAP-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-BAIAP-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Brn124-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Brn124-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-ChAT-MED.xml deleted file mode 100644 index fdadbaa..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ChAT-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ChAT-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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--- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR13-NDUS1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR13-NDUS1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR20-PPIB-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR20-PPIB-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR22-CO1A1-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR22-CO1A1-MED.xml deleted file mode 100644 index 845f121..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR22-CO1A1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR22-CO1A1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR3-JKIP3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR3-JKIP3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR30-CCG5-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR30-CCG5-MED.xml deleted file mode 100644 index b2c29fe..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR30-CCG5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR30-CCG5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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--- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR34-MTHFSD-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR34-MTHFSD-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - 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--- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ENR64-PSMF1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR64-PSMF1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-FoxD3-MED.xml deleted file mode 100644 index 2463c92..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-FoxD3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-FoxD3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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file mode 100644 index 9157105..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-HCN1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-HCN1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Hox7-MED.xml deleted file mode 100644 index d01f648..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Hox7-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Hox7-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Kv33e-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Kv33e-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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<voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV45-TMTC3-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV45-TMTC3-MED.xml deleted file mode 100644 index 8329768..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV45-TMTC3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-NOV45-TMTC3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV50-GDPD1-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV50-GDPD1-MED.xml deleted file mode 100644 index 602c511..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV50-GDPD1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-NOV50-GDPD1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV52-KANL3-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV52-KANL3-MED.xml deleted file mode 100644 index 2ea4116..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV52-KANL3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-NOV52-KANL3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV6-Stathmin-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV6-Stathmin-MED.xml deleted file mode 100644 index feee60c..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NOV6-Stathmin-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-NOV6-Stathmin-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NPR1a-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-NPR1a-MED.xml deleted file mode 100644 index be49984..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NPR1a-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Netrin-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Netrin-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NeuroD-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-NeuroD-MED.xml deleted file mode 100644 index d774b9b..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-NeuroD-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-NeuroD-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - 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<SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-P56-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-PCDH15-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-PCDH15-MED.xml deleted file mode 100644 index b7f4a62..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-PCDH15-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-PCDH15-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-PDF-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-PDF-MED.xml deleted file mode 100644 index e3ff30e..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-PDF-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-PDF-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Pde9-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Pde9-MED.xml deleted file mode 100644 index e1e6058..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Pde9-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Pde9-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" 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- <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Phox2b-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Phox2b-MED.xml deleted file mode 100644 index a7009c5..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Phox2b-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Pikachu-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Pikachu-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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file mode 100644 index d22801b..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-RIMS-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-RIMS-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Rab3-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Rab3-MED.xml deleted file mode 100644 index 031f9c6..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Rab3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Rab3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Sim1-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Sim1-MED.xml deleted file mode 100644 index f37c68a..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Sim1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Sim1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" 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- <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Sox4-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Sox4-MED.xml deleted file mode 100644 index a273631..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Sox4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-SoxB12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-SoxB12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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<SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Syt12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Syt7-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Syt7-MED.xml deleted file mode 100644 index 0cbc493..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Syt7-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Syt7-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Syta-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-Syta-MED.xml deleted file mode 100644 index 9a0ed58..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-Syta-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Syta-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-TRPV5-MED.xml deleted file mode 100644 index a7e2a97..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-TRPV5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-TRPV5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-ascI-MED.xml deleted file mode 100644 index 6241e51..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-ascI-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ascI-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-bsx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-bsx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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file mode 100644 index 6742689..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-dlx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-dlx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-eve-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-eve-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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file mode 100644 index a9c45c9..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-hox1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-hox1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-mecom-MED.xml deleted file mode 100644 index d407ee4..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-mecom-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-mecom-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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a/data/1.0.0-pre/images/prospr-6dpf-1-whole-neog-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-neog-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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deleted file mode 100644 index 2c67614..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-nompc3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-nompc3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 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-<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-pkd1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-pkd2-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-pkd2-MED.xml deleted file mode 100644 index 3bc008c..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-pkd2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-pkd2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" 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b/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Glands.xml deleted file mode 100644 index 44c46bd..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Glands.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-Glands.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform 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<SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-ProSPr6-Ref.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Pygidium.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Pygidium.xml deleted file mode 100644 index 5b58fa1..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Pygidium.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-Pygidium.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml deleted file mode 100644 index fc5205b..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml deleted file mode 100644 index 750f585..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-Stomodeum.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-VNC.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-VNC.xml deleted file mode 100644 index d742fdc..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-segmented-VNC.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-VNC.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-sert-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-sert-MED.xml deleted file mode 100644 index 5702f9f..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-sert-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-sert-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-six12-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-six12-MED.xml deleted file mode 100644 index 8e10e1b..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-six12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-six12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-six4-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-six4-MED.xml deleted file mode 100644 index 56e5bdb..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-six4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-six4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-tlx-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-tlx-MED.xml deleted file mode 100644 index eac7a1f..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-tlx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-tlx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-trk-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-trk-MED.xml deleted file mode 100644 index 89b6b44..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-trk-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-trk-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/prospr-6dpf-1-whole-uncx-MED.xml b/data/1.0.0-pre/images/prospr-6dpf-1-whole-uncx-MED.xml deleted file mode 100644 index cbc2161..0000000 --- a/data/1.0.0-pre/images/prospr-6dpf-1-whole-uncx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-uncx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-extrapolated.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-extrapolated.xml deleted file mode 100644 index c508249..0000000 --- a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-extrapolated.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-extrapolated.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>1719 1620 1427</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.16 0.16 0.2</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.16 0.0 0.0 0.0 0.0 0.16 0.0 0.0 0.0 0.0 0.2 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-inside.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-inside.xml deleted file mode 100644 index 9c923a7..0000000 --- a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-inside.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-inside.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>860 810 714</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.32 0.32 0.4</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.32 0.0 0.0 0.0 0.0 0.32 0.0 0.0 0.0 0.0 0.4 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-outside.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-outside.xml deleted file mode 100644 index 5f3be7f..0000000 --- a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-outside.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-outside.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>860 810 714</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.32 0.32 0.4</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.32 0.0 0.0 0.0 0.0 0.32 0.0 0.0 0.0 0.0 0.4 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-resin.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-resin.xml deleted file mode 100644 index f71df8d..0000000 --- a/data/1.0.0-pre/images/sbem-6dpf-1-whole-mask-resin.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-resin.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>860 811 11416</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.32 0.32 0.025</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.32 0.0 0.0 0.0 0.0 0.32 0.0 0.0 0.0 0.0 0.025 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/sbem-6dpf-1-whole-raw.xml b/data/1.0.0-pre/images/sbem-6dpf-1-whole-raw.xml deleted file mode 100644 index fcf8dfd..0000000 --- a/data/1.0.0-pre/images/sbem-6dpf-1-whole-raw.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>27499 25916 11416</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.01 0.01 0.025</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.01 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.025 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/images/xray-6dpf-1-whole-raw.xml b/data/1.0.0-pre/images/xray-6dpf-1-whole-raw.xml deleted file mode 100644 index 2fd965b..0000000 --- a/data/1.0.0-pre/images/xray-6dpf-1-whole-raw.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/xray-6dpf-1-whole-raw.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>687 648 713</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.4 0.4 0.4</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.4 0.0 0.0 0.0 0.0 0.4 0.0 0.0 0.0 0.0 0.4 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/misc/bookmarks.json b/data/1.0.0-pre/misc/bookmarks.json deleted file mode 100644 index 23da1cb..0000000 --- a/data/1.0.0-pre/misc/bookmarks.json +++ /dev/null @@ -1,6 +0,0 @@ -{"Nephridia1": {"Position": [96.60291585539845,146.7972323927267,185.4679511451342]}, - "Nephridia1-end-of-cilia": { - "Position": [70.98852643983105,121.02217692079869,218.4184352478732], - "View": [13.807572801786606, -1.8111383840173014, -5.574110788036241, 857.3394174845511, 0.0, 14.265847744427303, -4.635254915624211, -413.814106587081, 5.860966927339106, 4.266774646821368, 13.131782087358882, -3803.2535090112333] }, - "Left eye": {"Position": [177.0, 218.0, 67.0]} -} diff --git a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json deleted file mode 120000 index e78dd47..0000000 --- a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json +++ /dev/null @@ -1 +0,0 @@ -../../0.6.0/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cells-labels.json \ No newline at end of file diff --git a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json deleted file mode 120000 index c853ef5..0000000 --- a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json +++ /dev/null @@ -1 +0,0 @@ -../../0.6.0/misc/new_id_lut_sbem-6dpf-1-whole-segmented-cilia-labels.json \ No newline at end of file diff --git a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json b/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json deleted file mode 120000 index 0a02973..0000000 --- a/data/1.0.0-pre/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json +++ /dev/null @@ -1 +0,0 @@ -../../0.6.0/misc/new_id_lut_sbem-6dpf-1-whole-segmented-nuclei-labels.json \ No newline at end of file diff --git a/data/1.0.0-pre/misc/prospr-6dpf-1-whole_meds_all_genes.xml b/data/1.0.0-pre/misc/prospr-6dpf-1-whole_meds_all_genes.xml deleted file mode 100644 index c7c634c..0000000 --- a/data/1.0.0-pre/misc/prospr-6dpf-1-whole_meds_all_genes.xml +++ /dev/null @@ -1,8 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/misc/prospr-6dpf-1-whole_meds_all_genes.h5</hdf5> - </ImageLoader> - </SequenceDescription> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.xml b/data/1.0.0-pre/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.xml deleted file mode 100644 index 07b8e7c..0000000 --- a/data/1.0.0-pre/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.6.0/segmentations/prospr-6dpf-1-whole-virtual-cells-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml deleted file mode 100644 index 2b06347..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-ariande-neuropil.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>2750 2592 2854</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.1 0.1 0.1</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.1 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.1 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml deleted file mode 100644 index 4ea187a..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-cats-neuropil.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml deleted file mode 100644 index 92138f2..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>13750 12958 11416</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.02 0.02 0.025</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.02 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.025 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml deleted file mode 100644 index 25dd2b4..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-chromatin-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>13750 12958 11416</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.02 0.02 0.025</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.02 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.025 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml deleted file mode 100644 index 075cda5..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.3/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>27499 25916 11416</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.01 0.01 0.025</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.01 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.025 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml deleted file mode 100644 index 26ba713..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>2750 2592 2854</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.1 0.1 0.1</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.1 0.0 0.0 0.0 0.0 0.1 0.0 0.0 0.0 0.0 0.1 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml deleted file mode 100644 index f818c38..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>3438 3240 2854</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.08 0.08 0.1</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.1 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml deleted file mode 100644 index 390dbdb..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-tissue-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>3438 3240 2854</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.08 0.08 0.1</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.1 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-traces-labels.xml b/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-traces-labels.xml deleted file mode 100644 index e3442cd..0000000 --- a/data/1.0.0-pre/segmentations/sbem-6dpf-1-whole-traces-labels.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-traces-labels.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>3438 3240 2854</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.08 0.08 0.1</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.08 0.0 0.0 0.0 0.0 0.08 0.0 0.0 0.0 0.0 0.1 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv b/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv deleted file mode 120000 index 1147ca6..0000000 --- a/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/prospr-6dpf-1-whole-virtual-cells-labels/default.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv b/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv deleted file mode 120000 index 97673cf..0000000 --- a/data/1.0.0-pre/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/prospr-6dpf-1-whole-virtual-cells-labels/profile_clust_curated.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv deleted file mode 120000 index 1239688..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv deleted file mode 120000 index 5bda82c..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv deleted file mode 120000 index 69eba1e..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/extrapolated_intensity_correction.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv deleted file mode 120000 index e6d27ac..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv 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a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv deleted file mode 120000 index ce47063..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv deleted file mode 120000 index e5dd2bb..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/extrapolated_intensity_correction.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv deleted file mode 120000 index 64d86e4..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv deleted file mode 120000 index 7ab4da3..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv \ No newline at end of file diff --git a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-traces-labels/default.csv b/data/1.0.0-pre/tables/sbem-6dpf-1-whole-traces-labels/default.csv deleted file mode 120000 index e0cf8a1..0000000 --- a/data/1.0.0-pre/tables/sbem-6dpf-1-whole-traces-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.6.0/tables/sbem-6dpf-1-whole-traces-labels/default.csv \ No newline at end of file -- GitLab