From 7ab8ea165ca6c6266cb005f7f3d8cc5566e4e224 Mon Sep 17 00:00:00 2001 From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de> Date: Thu, 6 Feb 2020 16:31:23 +0100 Subject: [PATCH] Update image folder for v0.0.0 --- data/0.0.0/images/images.json | 1695 +++++++++++++++++ .../images/local/prospr-6dpf-1-whole-ache.xml | 39 + .../prospr-6dpf-1-whole-allcr1.xml} | 2 +- .../prospr-6dpf-1-whole-allcr2.xml} | 2 +- .../local/prospr-6dpf-1-whole-anpra.xml | 39 + .../local/prospr-6dpf-1-whole-anprb.xml | 39 + .../images/local/prospr-6dpf-1-whole-ap2.xml | 39 + .../images/local/prospr-6dpf-1-whole-arx.xml | 39 + .../images/local/prospr-6dpf-1-whole-ascb.xml | 39 + .../images/local/prospr-6dpf-1-whole-asci.xml | 39 + .../local/prospr-6dpf-1-whole-ascii.xml | 39 + .../images/local/prospr-6dpf-1-whole-ash.xml | 39 + .../prospr-6dpf-1-whole-asicalpha.xml} | 2 +- .../local/prospr-6dpf-1-whole-baiap.xml | 39 + .../local/prospr-6dpf-1-whole-barh1.xml | 39 + .../images/local/prospr-6dpf-1-whole-bca1.xml | 39 + .../local/prospr-6dpf-1-whole-beta3.xml | 39 + .../local/prospr-6dpf-1-whole-bmpr1.xml | 39 + .../prospr-6dpf-1-whole-boule-like.xml} | 2 +- .../local/prospr-6dpf-1-whole-brn3a.xml | 39 + .../images/local/prospr-6dpf-1-whole-bsx.xml | 39 + .../images/local/prospr-6dpf-1-whole-cal2.xml | 39 + .../prospr-6dpf-1-whole-calexcitin2.xml} | 2 +- .../prospr-6dpf-1-whole-calmodulin.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-catl.xml | 39 + .../images/local/prospr-6dpf-1-whole-ccvd.xml | 39 + .../local/prospr-6dpf-1-whole-cepu1.xml | 39 + .../images/local/prospr-6dpf-1-whole-chat.xml | 39 + .../local/prospr-6dpf-1-whole-chx10.xml | 39 + .../images/local/prospr-6dpf-1-whole-cnga.xml | 39 + .../local/prospr-6dpf-1-whole-co1a1.xml | 39 + .../images/local/prospr-6dpf-1-whole-coe.xml | 39 + .../images/local/prospr-6dpf-1-whole-dach.xml | 39 + .../prospr-6dpf-1-whole-dbhlike.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-dbx1.xml | 39 + .../local/prospr-6dpf-1-whole-delta.xml | 39 + .../images/local/prospr-6dpf-1-whole-dlx.xml | 39 + .../prospr-6dpf-1-whole-dopard2.xml} | 2 +- .../prospr-6dpf-1-whole-edu3to4at6dpf.xml} | 2 +- .../prospr-6dpf-1-whole-edu4to5at6dpf.xml} | 2 +- .../prospr-6dpf-1-whole-edu5to6at6dpf.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-elav.xml | 39 + .../images/local/prospr-6dpf-1-whole-eve.xml | 39 + .../images/local/prospr-6dpf-1-whole-eya.xml | 39 + .../images/local/prospr-6dpf-1-whole-fezf.xml | 39 + .../images/local/prospr-6dpf-1-whole-for.xml | 39 + .../local/prospr-6dpf-1-whole-foxd3.xml | 39 + .../local/prospr-6dpf-1-whole-foxn4.xml | 39 + .../images/local/prospr-6dpf-1-whole-fvri.xml | 39 + .../local/prospr-6dpf-1-whole-fxl21.xml | 39 + .../images/local/prospr-6dpf-1-whole-gad.xml | 39 + .../prospr-6dpf-1-whole-gata123.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-gcb.xml | 39 + .../images/local/prospr-6dpf-1-whole-gcd.xml | 39 + .../local/prospr-6dpf-1-whole-gdpd1.xml | 39 + .../prospr-6dpf-1-whole-globin-like.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-glt1.xml | 39 + .../images/local/prospr-6dpf-1-whole-glyt.xml | 39 + .../images/local/prospr-6dpf-1-whole-gnrh.xml | 39 + .../local/prospr-6dpf-1-whole-gnrhr.xml | 39 + .../images/local/prospr-6dpf-1-whole-gpb.xml | 39 + .../local/prospr-6dpf-1-whole-gpcr2.xml | 39 + .../prospr-6dpf-1-whole-gpcr203.xml} | 2 +- .../local/prospr-6dpf-1-whole-gpcr209.xml | 39 + .../local/prospr-6dpf-1-whole-gpcr210.xml | 39 + .../local/prospr-6dpf-1-whole-gpcr32.xml | 39 + .../local/prospr-6dpf-1-whole-gppcr21.xml | 39 + .../local/prospr-6dpf-1-whole-grik3.xml | 39 + .../images/local/prospr-6dpf-1-whole-grm7.xml | 39 + .../images/local/prospr-6dpf-1-whole-gsx.xml | 39 + .../images/local/prospr-6dpf-1-whole-gucy.xml | 39 + .../images/local/prospr-6dpf-1-whole-hand.xml | 39 + .../images/local/prospr-6dpf-1-whole-hb9.xml | 39 + .../images/local/prospr-6dpf-1-whole-hcn1.xml | 39 + .../images/local/prospr-6dpf-1-whole-hnf6.xml | 39 + .../images/local/prospr-6dpf-1-whole-hox1.xml | 39 + .../images/local/prospr-6dpf-1-whole-hox4.xml | 39 + .../images/local/prospr-6dpf-1-whole-hox7.xml | 39 + .../images/local/prospr-6dpf-1-whole-hr38.xml | 39 + .../local/prospr-6dpf-1-whole-irx2546.xml | 39 + .../images/local/prospr-6dpf-1-whole-irx6.xml | 39 + .../images/local/prospr-6dpf-1-whole-isl.xml | 39 + .../local/prospr-6dpf-1-whole-jkip3.xml | 39 + .../prospr-6dpf-1-whole-junctophilin1.xml} | 14 +- .../local/prospr-6dpf-1-whole-kanl3.xml | 39 + .../local/prospr-6dpf-1-whole-kv33b.xml | 39 + .../local/prospr-6dpf-1-whole-kv33e.xml | 39 + .../local/prospr-6dpf-1-whole-lbx1b.xml | 39 + .../prospr-6dpf-1-whole-leucin-rich.xml} | 2 +- .../local/prospr-6dpf-1-whole-lhx15.xml | 39 + .../images/local/prospr-6dpf-1-whole-lhx2.xml | 39 + .../images/local/prospr-6dpf-1-whole-lhx3.xml | 39 + .../images/local/prospr-6dpf-1-whole-lhx6.xml | 39 + .../images/local/prospr-6dpf-1-whole-lmo4.xml | 39 + 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| 39 + .../local/prospr-6dpf-1-whole-pax258.xml | 39 + .../images/local/prospr-6dpf-1-whole-pax6.xml | 39 + .../local/prospr-6dpf-1-whole-pcdh15.xml | 39 + .../images/local/prospr-6dpf-1-whole-pde9.xml | 39 + .../images/local/prospr-6dpf-1-whole-pdf.xml | 39 + .../images/local/prospr-6dpf-1-whole-pea3.xml | 39 + .../images/local/prospr-6dpf-1-whole-pgam.xml | 39 + .../images/local/prospr-6dpf-1-whole-phc2.xml | 39 + .../local/prospr-6dpf-1-whole-phox2b.xml | 39 + .../local/prospr-6dpf-1-whole-pikachu.xml | 39 + .../local/prospr-6dpf-1-whole-pitxb.xml | 39 + .../images/local/prospr-6dpf-1-whole-plcg.xml | 39 + .../images/local/prospr-6dpf-1-whole-ppib.xml | 39 + .../local/prospr-6dpf-1-whole-prdm8.xml | 39 + .../images/local/prospr-6dpf-1-whole-prox.xml | 39 + .../local/prospr-6dpf-1-whole-psmf1.xml | 39 + .../images/local/prospr-6dpf-1-whole-ptf1.xml | 39 + .../images/local/prospr-6dpf-1-whole-rab3.xml | 39 + .../images/local/prospr-6dpf-1-whole-rims.xml | 39 + .../images/local/prospr-6dpf-1-whole-robo.xml | 39 + .../images/local/prospr-6dpf-1-whole-rpc2.xml | 39 + .../images/local/prospr-6dpf-1-whole-rx.xml | 39 + .../images/local/prospr-6dpf-1-whole-ryr2.xml | 39 + .../local/prospr-6dpf-1-whole-scn8aa.xml | 39 + ...-6dpf-1-whole-segmented-crypticsegment.xml | 39 + .../prospr-6dpf-1-whole-segmented-foregut.xml | 39 + .../prospr-6dpf-1-whole-segmented-head.xml} | 2 +- ...6dpf-1-whole-segmented-lateralectoderm.xml | 39 + ...spr-6dpf-1-whole-segmented-prospr6-ref.xml | 39 + ...rospr-6dpf-1-whole-segmented-pygidium.xml} | 2 +- ...pr-6dpf-1-whole-segmented-restofanimal.xml | 39 + .../prospr-6dpf-1-whole-segmented-vnc.xml | 39 + .../local/prospr-6dpf-1-whole-sema2.xml | 39 + .../images/local/prospr-6dpf-1-whole-sert.xml | 39 + .../images/local/prospr-6dpf-1-whole-sim1.xml | 39 + .../local/prospr-6dpf-1-whole-six12.xml | 39 + .../images/local/prospr-6dpf-1-whole-six4.xml | 39 + .../images/local/prospr-6dpf-1-whole-slit.xml | 39 + .../images/local/prospr-6dpf-1-whole-snd1.xml | 39 + .../images/local/prospr-6dpf-1-whole-sox2.xml | 39 + .../images/local/prospr-6dpf-1-whole-sox4.xml | 39 + .../local/prospr-6dpf-1-whole-soxb12.xml | 39 + .../local/prospr-6dpf-1-whole-soxb2.xml | 39 + .../images/local/prospr-6dpf-1-whole-sp8.xml | 39 + .../prospr-6dpf-1-whole-stathmin.xml} | 2 +- .../prospr-6dpf-1-whole-synaptopodin.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-syt.xml | 39 + .../local/prospr-6dpf-1-whole-syt12.xml | 39 + .../images/local/prospr-6dpf-1-whole-syt7.xml | 39 + .../images/local/prospr-6dpf-1-whole-syta.xml | 39 + .../images/local/prospr-6dpf-1-whole-tal.xml | 39 + .../images/local/prospr-6dpf-1-whole-tbh.xml | 39 + .../local/prospr-6dpf-1-whole-tbx20.xml | 39 + .../images/local/prospr-6dpf-1-whole-th.xml | 39 + .../images/local/prospr-6dpf-1-whole-timp.xml | 39 + .../images/local/prospr-6dpf-1-whole-tlx.xml | 39 + .../local/prospr-6dpf-1-whole-tmtc3.xml | 39 + 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.../sbem-6dpf-1-whole-segmented-nuclei.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-tissue.xml} | 2 +- .../images/prospr-6dpf-1-whole-Beta3-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Bmpr1-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Brn3a-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ChAT-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Chx10-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Dach-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR1-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR10-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR12-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR13-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR16-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR19-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR2-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR20-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR22-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR25-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ENR29-MED.xml | 39 - 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| 39 - .../images/prospr-6dpf-1-whole-Hand-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Hb9-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Hox5-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Hox7-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Hr38-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Isl-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Kv33b-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Kv33e-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Lhx15-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Lhx2-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Lhx3-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Lmo4-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Lmx1-MED.xml | 39 - .../prospr-6dpf-1-whole-Loc77859-MED.xml | 39 - .../images/prospr-6dpf-1-whole-MHCL4-MED.xml | 39 - .../images/prospr-6dpf-1-whole-MRLC2-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Maf-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Mitf-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Munc22-MED.xml | 39 - 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"local": "local/prospr-6dpf-1-whole-tbh.xml" + } + }, + "prospr-6dpf-1-whole-tbx20": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-tbx20.xml" + } + }, + "prospr-6dpf-1-whole-th": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-th.xml" + } + }, + "prospr-6dpf-1-whole-timp": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-timp.xml" + } + }, + "prospr-6dpf-1-whole-tlx": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-tlx.xml" + } + }, + "prospr-6dpf-1-whole-tmtc3": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-tmtc3.xml" + } + }, + "prospr-6dpf-1-whole-trk": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-trk.xml" + } + }, + "prospr-6dpf-1-whole-trph": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-trph.xml" + } + }, + "prospr-6dpf-1-whole-trpv": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-trpv.xml" + } + }, + "prospr-6dpf-1-whole-trpv4": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-trpv4.xml" + } + }, + "prospr-6dpf-1-whole-trpv5": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-trpv5.xml" + } + }, + "prospr-6dpf-1-whole-twist": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-twist.xml" + } + }, + "prospr-6dpf-1-whole-unc22": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-unc22.xml" + } + }, + "prospr-6dpf-1-whole-uncs": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-uncs.xml" + } + }, + "prospr-6dpf-1-whole-uncx": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-uncx.xml" + } + }, + "prospr-6dpf-1-whole-upp": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-upp.xml" + } + }, + "prospr-6dpf-1-whole-usp9x": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-usp9x.xml" + } + }, + "prospr-6dpf-1-whole-vacht": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-vacht.xml" + } + }, + "prospr-6dpf-1-whole-vat1l": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-vat1l.xml" + } + }, + "prospr-6dpf-1-whole-vegfr": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-vegfr.xml" + } + }, + "prospr-6dpf-1-whole-vglut": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-vglut.xml" + } + }, + "prospr-6dpf-1-whole-wnt16": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-wnt16.xml" + } + }, + "prospr-6dpf-1-whole-wnt5": { + "Color": "Magenta", + "MaxValue": 1000, + "MinValue": 0, + "Storage": { + "local": "local/prospr-6dpf-1-whole-wnt5.xml" + } + }, + "sbem-6dpf-1-whole-raw": { + "Color": "White", + "MaxValue": 255, + "MinValue": 0, + "Storage": { + "local": "local/sbem-6dpf-1-whole-raw.xml" + } + }, + "sbem-6dpf-1-whole-segmented-cells": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-cells.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-cells" + }, + "sbem-6dpf-1-whole-segmented-muscle": { + "Color": "White", + "MaxValue": 1, + "MinValue": 0, + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-muscle.xml" + } + }, + "sbem-6dpf-1-whole-segmented-nuclei": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-nuclei.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-nuclei" + }, + "sbem-6dpf-1-whole-segmented-tissue": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-tissue.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-tissue" + } +} \ No newline at end of file diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ache.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ache.xml new file mode 100644 index 0000000..ab66fea --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ache.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ache.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-TH-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-allcr1.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-TH-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-allcr1.xml index 08cc051..1bd3df9 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-TH-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-allcr1.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-TH-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-allcr1.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-rx-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-allcr2.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-rx-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-allcr2.xml index 210f75d..5a9c8dd 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-rx-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-allcr2.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-rx-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-allcr2.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-anpra.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-anpra.xml new file mode 100644 index 0000000..a15309c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-anpra.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-anpra.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-anprb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-anprb.xml new file mode 100644 index 0000000..cbccc1d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-anprb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-anprb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ap2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ap2.xml new file mode 100644 index 0000000..61471d8 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ap2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ap2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-arx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-arx.xml new file mode 100644 index 0000000..654e15f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-arx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-arx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ascb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ascb.xml new file mode 100644 index 0000000..a7084c0 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ascb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ascb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-asci.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-asci.xml new file mode 100644 index 0000000..1a71132 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-asci.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-asci.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ascii.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ascii.xml new file mode 100644 index 0000000..da7293d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ascii.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ascii.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ash.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ash.xml new file mode 100644 index 0000000..7f27a46 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ash.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ash.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-BAIAP-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-asicalpha.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-BAIAP-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-asicalpha.xml index f297a42..d0003b9 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-BAIAP-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-asicalpha.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-BAIAP-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-asicalpha.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-baiap.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-baiap.xml new file mode 100644 index 0000000..d15c547 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-baiap.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-baiap.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-barh1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-barh1.xml new file mode 100644 index 0000000..ae6e138 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-barh1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-barh1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-bca1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-bca1.xml new file mode 100644 index 0000000..4e9d538 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-bca1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-bca1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-beta3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-beta3.xml new file mode 100644 index 0000000..4aa08a7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-beta3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-beta3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-bmpr1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-bmpr1.xml new file mode 100644 index 0000000..34be153 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-bmpr1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-bmpr1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-AllCR1-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-boule-like.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-AllCR1-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-boule-like.xml index 11bb08c..232c9a4 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-AllCR1-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-boule-like.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-AllCR1-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-boule-like.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-brn3a.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-brn3a.xml new file mode 100644 index 0000000..44716c0 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-brn3a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-brn3a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-bsx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-bsx.xml new file mode 100644 index 0000000..c0eb7b4 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-bsx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-bsx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-cal2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-cal2.xml new file mode 100644 index 0000000..3b36cf7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-cal2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-cal2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-DbhLike-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-calexcitin2.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-DbhLike-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-calexcitin2.xml index 04a0cfa..7b01aa6 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-DbhLike-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-calexcitin2.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-DbhLike-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-calexcitin2.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-AllCR2-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-calmodulin.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-AllCR2-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-calmodulin.xml index c519941..f3915e9 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-AllCR2-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-calmodulin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-AllCR2-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-calmodulin.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-catl.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-catl.xml new file mode 100644 index 0000000..7f532e8 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-catl.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-catl.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ccvd.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ccvd.xml new file mode 100644 index 0000000..9aa2d75 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ccvd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ccvd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-cepu1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-cepu1.xml new file mode 100644 index 0000000..7ac6491 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-cepu1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-cepu1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-chat.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-chat.xml new file mode 100644 index 0000000..f5b5c2d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-chat.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-chat.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-chx10.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-chx10.xml new file mode 100644 index 0000000..9f56a7a --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-chx10.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-chx10.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-cnga.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-cnga.xml new file mode 100644 index 0000000..367f920 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-cnga.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-cnga.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-co1a1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-co1a1.xml new file mode 100644 index 0000000..9c3fdef --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-co1a1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-co1a1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-coe.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-coe.xml new file mode 100644 index 0000000..2add219 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-coe.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-coe.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-dach.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-dach.xml new file mode 100644 index 0000000..d740f7a --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-dach.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-dach.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Ash-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-dbhlike.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-Ash-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-dbhlike.xml index c7ca86f..44a8f39 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Ash-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-dbhlike.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Ash-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-dbhlike.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-dbx1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-dbx1.xml new file mode 100644 index 0000000..9e626e9 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-dbx1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-dbx1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-delta.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-delta.xml new file mode 100644 index 0000000..3ec8195 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-delta.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-delta.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-dlx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-dlx.xml new file mode 100644 index 0000000..9580b17 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-dlx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-dlx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-COE-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-dopard2.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-COE-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-dopard2.xml index 707d500..a984616 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-COE-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-dopard2.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-COE-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-dopard2.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Loc5285ct-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-Loc5285ct-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml index 58f90e8..668b78a 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Loc5285ct-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Loc5285ct-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-edu3to4at6dpf.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Loc8913nt-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-Loc8913nt-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml index 04fa868..71aeade 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Loc8913nt-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Loc8913nt-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-edu4to5at6dpf.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-asicalpha-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-asicalpha-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml index 37f6b53..3104bab 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-asicalpha-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-asicalpha-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-edu5to6at6dpf.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-elav.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-elav.xml new file mode 100644 index 0000000..9a4edf7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-elav.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-elav.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-eve.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-eve.xml new file mode 100644 index 0000000..e85412c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-eve.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-eve.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-eya.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-eya.xml new file mode 100644 index 0000000..61735e8 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-eya.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-eya.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-fezf.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-fezf.xml new file mode 100644 index 0000000..e2ec549 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-fezf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-fezf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-for.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-for.xml new file mode 100644 index 0000000..0b94650 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-for.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-for.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-foxd3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-foxd3.xml new file mode 100644 index 0000000..bca572e --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-foxd3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-foxd3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-foxn4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-foxn4.xml new file mode 100644 index 0000000..aa88752 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-foxn4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-foxn4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-fvri.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-fvri.xml new file mode 100644 index 0000000..cb5ff14 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-fvri.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-fvri.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-fxl21.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-fxl21.xml new file mode 100644 index 0000000..eb0c0ec --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-fxl21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-fxl21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gad.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gad.xml new file mode 100644 index 0000000..d70ce35 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gad.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gad.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Arx-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gata123.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-Arx-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-gata123.xml index 1e11fca..4c6a718 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Arx-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gata123.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Arx-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-gata123.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gcb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gcb.xml new file mode 100644 index 0000000..9d32ea5 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gcb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gcb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gcd.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gcd.xml new file mode 100644 index 0000000..89a1691 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gcd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gcd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gdpd1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gdpd1.xml new file mode 100644 index 0000000..1b76664 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gdpd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gdpd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-DopaRD2-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-globin-like.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-DopaRD2-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-globin-like.xml index fb81109..0b1a49b 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-DopaRD2-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-globin-like.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-DopaRD2-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-globin-like.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-glt1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-glt1.xml new file mode 100644 index 0000000..c1c8610 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-glt1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-glt1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-glyt.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-glyt.xml new file mode 100644 index 0000000..6b3f3d8 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-glyt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-glyt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gnrh.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gnrh.xml new file mode 100644 index 0000000..979d61f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gnrh.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gnrh.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gnrhr.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gnrhr.xml new file mode 100644 index 0000000..1e56374 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gnrhr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gnrhr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gpb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpb.xml new file mode 100644 index 0000000..35d2644 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gpb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr2.xml new file mode 100644 index 0000000..93a1ce4 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gpcr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-AP2-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr203.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-AP2-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr203.xml index cadc5a7..92415b4 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-AP2-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr203.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-AP2-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-gpcr203.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr209.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr209.xml new file mode 100644 index 0000000..2aa899f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr209.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gpcr209.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr210.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr210.xml new file mode 100644 index 0000000..b2d34cf --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr210.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gpcr210.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr32.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr32.xml new file mode 100644 index 0000000..c937cf4 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gpcr32.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gpcr32.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gppcr21.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gppcr21.xml new file mode 100644 index 0000000..92c7a7b --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gppcr21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gppcr21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-grik3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-grik3.xml new file mode 100644 index 0000000..f2b644e --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-grik3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-grik3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-grm7.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-grm7.xml new file mode 100644 index 0000000..6d9c472 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-grm7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-grm7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gsx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gsx.xml new file mode 100644 index 0000000..e40775d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gsx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gsx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-gucy.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-gucy.xml new file mode 100644 index 0000000..493e250 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-gucy.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-gucy.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hand.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hand.xml new file mode 100644 index 0000000..15c4586 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hand.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hand.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hb9.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hb9.xml new file mode 100644 index 0000000..c3160f0 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hb9.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hb9.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hcn1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hcn1.xml new file mode 100644 index 0000000..1319e0d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hcn1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hcn1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hnf6.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hnf6.xml new file mode 100644 index 0000000..c884c42 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hnf6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hnf6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hox1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hox1.xml new file mode 100644 index 0000000..5af3ee5 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hox1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hox1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hox4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hox4.xml new file mode 100644 index 0000000..e013d9c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hox4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hox4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hox7.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hox7.xml new file mode 100644 index 0000000..a94f0d9 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hox7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hox7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-hr38.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-hr38.xml new file mode 100644 index 0000000..4c4e2f1 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-hr38.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-hr38.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-irx2546.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-irx2546.xml new file mode 100644 index 0000000..04227a2 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-irx2546.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-irx2546.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-irx6.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-irx6.xml new file mode 100644 index 0000000..4a955bc --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-irx6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-irx6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-isl.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-isl.xml new file mode 100644 index 0000000..16f9e8a --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-isl.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-isl.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-jkip3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-jkip3.xml new file mode 100644 index 0000000..2a77918 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-jkip3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-jkip3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-PNS.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-junctophilin1.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-segmented-PNS.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-junctophilin1.xml index fd9e36f..6ee9866 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-PNS.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-junctophilin1.xml @@ -2,15 +2,9 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-PNS.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-junctophilin1.h5</hdf5> </ImageLoader> <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> <ViewSetup> <id>0</id> <name>channel 1</name> @@ -23,6 +17,12 @@ <channel>1</channel> </attributes> </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> </ViewSetups> <Timepoints type="range"> <first>0</first> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-kanl3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-kanl3.xml new file mode 100644 index 0000000..81b779f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-kanl3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-kanl3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-kv33b.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-kv33b.xml new file mode 100644 index 0000000..8907220 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-kv33b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-kv33b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-kv33e.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-kv33e.xml new file mode 100644 index 0000000..ca03f87 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-kv33e.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-kv33e.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lbx1b.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lbx1b.xml new file mode 100644 index 0000000..49590c0 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lbx1b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lbx1b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR203-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-leucin-rich.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-GPCR203-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-leucin-rich.xml index 4a249cd..61941b9 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR203-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-leucin-rich.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GPCR203-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-leucin-rich.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx15.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx15.xml new file mode 100644 index 0000000..bcea76f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx15.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lhx15.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx2.xml new file mode 100644 index 0000000..9583fde --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lhx2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx3.xml new file mode 100644 index 0000000..a1571cb --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lhx3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx6.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx6.xml new file mode 100644 index 0000000..0bf1e99 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lhx6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lhx6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lmo4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lmo4.xml new file mode 100644 index 0000000..f87ec8c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lmo4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lmo4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-lmx1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-lmx1.xml new file mode 100644 index 0000000..ece8f6e --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-lmx1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-lmx1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-AChE-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc28250.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-AChE-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-loc28250.xml index 0cdf09c..3e4dbf0 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-AChE-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc28250.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-AChE-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-loc28250.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ANPRA-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc5285ct.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-ANPRA-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-loc5285ct.xml index cb36cda..46ff895 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ANPRA-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc5285ct.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ANPRA-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-loc5285ct.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ASCb-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc77859.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-ASCb-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-loc77859.xml index 13f2199..3ca29ab 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ASCb-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc77859.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ASCb-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-loc77859.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ANPRB-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc8913nt.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-ANPRB-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-loc8913nt.xml index 5e58cc0..041b677 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ANPRB-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-loc8913nt.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ANPRB-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-loc8913nt.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-maf.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-maf.xml new file mode 100644 index 0000000..354a1c2 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-maf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-maf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-mecom.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-mecom.xml new file mode 100644 index 0000000..963daf3 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-mecom.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-mecom.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-mhcl4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-mhcl4.xml new file mode 100644 index 0000000..af6fc1c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-mhcl4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-mhcl4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-mitf.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-mitf.xml new file mode 100644 index 0000000..4dc9005 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-mitf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-mitf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-mrlc2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-mrlc2.xml new file mode 100644 index 0000000..7b7a9a2 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-mrlc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-mrlc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-msx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-msx.xml new file mode 100644 index 0000000..3f1e3f1 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-msx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-msx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-mthfsd.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-mthfsd.xml new file mode 100644 index 0000000..59209e7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-mthfsd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-mthfsd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-munc22.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-munc22.xml new file mode 100644 index 0000000..f5fa6de --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-munc22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-munc22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-muncb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-muncb.xml new file mode 100644 index 0000000..90d06e0 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-muncb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-muncb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nachr.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nachr.xml new file mode 100644 index 0000000..53b8a11 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nachr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nachr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nb5r3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nb5r3.xml new file mode 100644 index 0000000..c9ad9cd --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nb5r3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nb5r3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ndus1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ndus1.xml new file mode 100644 index 0000000..cfb2eb0 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ndus1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ndus1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-neog.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-neog.xml new file mode 100644 index 0000000..d0ad618 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-neog.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-neog.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-netrin.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-netrin.xml new file mode 100644 index 0000000..fc97270 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-netrin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-netrin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-neurod.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-neurod.xml new file mode 100644 index 0000000..ed53680 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-neurod.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-neurod.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ngb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ngb.xml new file mode 100644 index 0000000..c0732e5 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ngb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ngb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ngn.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ngn.xml new file mode 100644 index 0000000..78b88c9 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ngn.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ngn.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nk21.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nk21.xml new file mode 100644 index 0000000..f522907 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nk21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nk21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nk22.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nk22.xml new file mode 100644 index 0000000..96323fa --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nk22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nk22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nk6.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nk6.xml new file mode 100644 index 0000000..60c3c98 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nk6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nk6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nmdar.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nmdar.xml new file mode 100644 index 0000000..fb3e757 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nmdar.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nmdar.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-noe1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-noe1.xml new file mode 100644 index 0000000..6c615bb --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-noe1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-noe1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Calmodulin-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-Calmodulin-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml index ef8b171..a3dd19b 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Calmodulin-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Calmodulin-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-non-muscle-mhc.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nov2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nov2.xml new file mode 100644 index 0000000..d06a48e --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nov2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nov2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-nov29.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nov29.xml new file mode 100644 index 0000000..069a8d7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nov29.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-nov29.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-npr1a.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-npr1a.xml new file mode 100644 index 0000000..3f5bf08 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-npr1a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-npr1a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ntrps.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ntrps.xml new file mode 100644 index 0000000..14cdd33 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ntrps.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ntrps.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-BarH1-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-nucleolin.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-BarH1-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-nucleolin.xml index 759c269..440179a 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-BarH1-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-nucleolin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-BarH1-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-nucleolin.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-odo2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-odo2.xml new file mode 100644 index 0000000..2fada56 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-odo2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-odo2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-olig.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-olig.xml new file mode 100644 index 0000000..849fe8d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-olig.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-olig.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-olm2a.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-olm2a.xml new file mode 100644 index 0000000..3225c20 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-olm2a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-olm2a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-otp.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-otp.xml new file mode 100644 index 0000000..8779dec --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-otp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-otp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-p56.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-p56.xml new file mode 100644 index 0000000..d1a37a6 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-p56.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-p56.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-paraxis.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-paraxis.xml new file mode 100644 index 0000000..7a2dec7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-paraxis.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-paraxis.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-patched.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-patched.xml new file mode 100644 index 0000000..1a2a985 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-patched.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-patched.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pax258.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pax258.xml new file mode 100644 index 0000000..47c24ec --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pax258.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pax258.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pax6.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pax6.xml new file mode 100644 index 0000000..910fd64 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pax6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pax6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pcdh15.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pcdh15.xml new file mode 100644 index 0000000..8bc5f74 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pcdh15.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pcdh15.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pde9.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pde9.xml new file mode 100644 index 0000000..216fd56 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pde9.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pde9.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pdf.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pdf.xml new file mode 100644 index 0000000..5c17468 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pdf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pdf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pea3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pea3.xml new file mode 100644 index 0000000..7e09ee6 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pea3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pea3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pgam.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pgam.xml new file mode 100644 index 0000000..ee70e60 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pgam.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pgam.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-phc2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-phc2.xml new file mode 100644 index 0000000..12ac4f7 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-phc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-phc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-phox2b.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-phox2b.xml new file mode 100644 index 0000000..9b5bd95 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-phox2b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-phox2b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pikachu.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pikachu.xml new file mode 100644 index 0000000..8de8d28 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pikachu.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pikachu.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-pitxb.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-pitxb.xml new file mode 100644 index 0000000..b2a2809 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-pitxb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-pitxb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-plcg.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-plcg.xml new file mode 100644 index 0000000..e5f8da5 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-plcg.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-plcg.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ppib.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ppib.xml new file mode 100644 index 0000000..f8922da --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ppib.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ppib.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-prdm8.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-prdm8.xml new file mode 100644 index 0000000..c51cf21 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-prdm8.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-prdm8.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-prox.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-prox.xml new file mode 100644 index 0000000..1db5503 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-prox.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-prox.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-psmf1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-psmf1.xml new file mode 100644 index 0000000..b3e8a81 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-psmf1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-psmf1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ptf1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ptf1.xml new file mode 100644 index 0000000..552de77 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ptf1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ptf1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-rab3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-rab3.xml new file mode 100644 index 0000000..16030d8 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-rab3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-rab3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-rims.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-rims.xml new file mode 100644 index 0000000..2dc7166 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-rims.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-rims.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-robo.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-robo.xml new file mode 100644 index 0000000..80deff4 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-robo.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-robo.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-rpc2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-rpc2.xml new file mode 100644 index 0000000..3037f0f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-rpc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-rpc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-rx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-rx.xml new file mode 100644 index 0000000..d451e66 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-rx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-rx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-ryr2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-ryr2.xml new file mode 100644 index 0000000..ea82483 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-ryr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-ryr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-scn8aa.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-scn8aa.xml new file mode 100644 index 0000000..3b9347c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-scn8aa.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-scn8aa.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml new file mode 100644 index 0000000..f667e16 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-crypticsegment.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-foregut.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-foregut.xml new file mode 100644 index 0000000..3b8319f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-foregut.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-foregut.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Head.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-head.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-segmented-Head.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-head.xml index de6c251..cb16603 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Head.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-head.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-Head.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-head.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml new file mode 100644 index 0000000..5cc2075 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-lateralectoderm.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.xml new file mode 100644 index 0000000..7bd7be2 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-prospr6-ref.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Pygidium.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-segmented-Pygidium.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml index b9b4060..c8147d9 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Pygidium.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-Pygidium.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-pygidium.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml new file mode 100644 index 0000000..a015481 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-restofanimal.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-vnc.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-vnc.xml new file mode 100644 index 0000000..a735c5c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-segmented-vnc.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-segmented-vnc.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-sema2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-sema2.xml new file mode 100644 index 0000000..44a457b --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-sema2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-sema2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-sert.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-sert.xml new file mode 100644 index 0000000..5bd35e2 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-sert.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-sert.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-sim1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-sim1.xml new file mode 100644 index 0000000..dd1026c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-sim1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-sim1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-six12.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-six12.xml new file mode 100644 index 0000000..37cc5eb --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-six12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-six12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-six4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-six4.xml new file mode 100644 index 0000000..c0a18a2 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-six4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-six4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-slit.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-slit.xml new file mode 100644 index 0000000..8adaaed --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-slit.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-slit.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-snd1.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-snd1.xml new file mode 100644 index 0000000..ea5a73c --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-snd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-snd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-sox2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-sox2.xml new file mode 100644 index 0000000..337e15f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-sox2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-sox2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-sox4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-sox4.xml new file mode 100644 index 0000000..f6518ee --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-sox4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-sox4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-soxb12.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-soxb12.xml new file mode 100644 index 0000000..d8d1d25 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-soxb12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-soxb12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-soxb2.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-soxb2.xml new file mode 100644 index 0000000..305b537 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-soxb2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-soxb2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-sp8.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-sp8.xml new file mode 100644 index 0000000..1367f34 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-sp8.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-sp8.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Cal2-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-stathmin.xml similarity index 93% rename from data/0.0.0/images/prospr-6dpf-1-whole-Cal2-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-stathmin.xml index 92a11c7..67fca2b 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Cal2-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-stathmin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Cal2-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-stathmin.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Loc28250-MED.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-synaptopodin.xml similarity index 94% rename from data/0.0.0/images/prospr-6dpf-1-whole-Loc28250-MED.xml rename to data/0.0.0/images/local/prospr-6dpf-1-whole-synaptopodin.xml index 16e9240..1cfc29a 100644 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Loc28250-MED.xml +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-synaptopodin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Loc28250-MED.h5</hdf5> + <hdf5 type="relative">prospr-6dpf-1-whole-synaptopodin.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-syt.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-syt.xml new file mode 100644 index 0000000..4df9637 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-syt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-syt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-syt12.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-syt12.xml new file mode 100644 index 0000000..df2580e --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-syt12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-syt12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-syt7.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-syt7.xml new file mode 100644 index 0000000..76a3eae --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-syt7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-syt7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-syta.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-syta.xml new file mode 100644 index 0000000..0160022 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-syta.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-syta.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-tal.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-tal.xml new file mode 100644 index 0000000..eef85f6 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-tal.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-tal.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-tbh.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-tbh.xml new file mode 100644 index 0000000..a714ce1 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-tbh.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-tbh.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-tbx20.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-tbx20.xml new file mode 100644 index 0000000..c8844d5 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-tbx20.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-tbx20.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-th.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-th.xml new file mode 100644 index 0000000..40cee65 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-th.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-th.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-timp.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-timp.xml new file mode 100644 index 0000000..0bd4b0b --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-timp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-timp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-tlx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-tlx.xml new file mode 100644 index 0000000..223607a --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-tlx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-tlx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-tmtc3.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-tmtc3.xml new file mode 100644 index 0000000..11b421d --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-tmtc3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-tmtc3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-trk.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-trk.xml new file mode 100644 index 0000000..36115b5 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-trk.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-trk.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-trph.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-trph.xml new file mode 100644 index 0000000..c044c31 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-trph.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-trph.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv.xml new file mode 100644 index 0000000..61122d4 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-trpv.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv4.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv4.xml new file mode 100644 index 0000000..3d50daa --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-trpv4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv5.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv5.xml new file mode 100644 index 0000000..6d151ed --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-trpv5.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-trpv5.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-twist.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-twist.xml new file mode 100644 index 0000000..bd51622 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-twist.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-twist.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-unc22.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-unc22.xml new file mode 100644 index 0000000..4ba3515 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-unc22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-unc22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-uncs.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-uncs.xml new file mode 100644 index 0000000..2511c3e --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-uncs.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-uncs.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-uncx.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-uncx.xml new file mode 100644 index 0000000..e3c3558 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-uncx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-uncx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-upp.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-upp.xml new file mode 100644 index 0000000..4a77ea6 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-upp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-upp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-usp9x.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-usp9x.xml new file mode 100644 index 0000000..6726752 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-usp9x.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-usp9x.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-vacht.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-vacht.xml new file mode 100644 index 0000000..f1a10c9 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-vacht.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-vacht.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-vat1l.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-vat1l.xml new file mode 100644 index 0000000..e06847f --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-vat1l.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-vat1l.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-vegfr.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-vegfr.xml new file mode 100644 index 0000000..791c237 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-vegfr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-vegfr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-vglut.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-vglut.xml new file mode 100644 index 0000000..c6f13bb --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-vglut.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-vglut.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-wnt16.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-wnt16.xml new file mode 100644 index 0000000..3d02887 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-wnt16.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-wnt16.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/local/prospr-6dpf-1-whole-wnt5.xml b/data/0.0.0/images/local/prospr-6dpf-1-whole-wnt5.xml new file mode 100644 index 0000000..e667f87 --- /dev/null +++ b/data/0.0.0/images/local/prospr-6dpf-1-whole-wnt5.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">prospr-6dpf-1-whole-wnt5.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.0.0/images/sbem-6dpf-1-whole-raw.xml b/data/0.0.0/images/local/sbem-6dpf-1-whole-raw.xml similarity index 92% rename from data/0.0.0/images/sbem-6dpf-1-whole-raw.xml rename to data/0.0.0/images/local/sbem-6dpf-1-whole-raw.xml index fcf8dfd..5bcba36 100644 --- a/data/0.0.0/images/sbem-6dpf-1-whole-raw.xml +++ b/data/0.0.0/images/local/sbem-6dpf-1-whole-raw.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-cells.xml similarity index 92% rename from data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml rename to data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-cells.xml index 5a00028..9605c3a 100644 --- a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml +++ b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-cells.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">sbem-6dpf-1-whole-segmented-cells-labels.h5</hdf5> + <hdf5 type="relative">sbem-6dpf-1-whole-segmented-cells.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-muscles.xml b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-muscle.xml similarity index 91% rename from data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-muscles.xml rename to data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-muscle.xml index 26ba713..e70beed 100644 --- a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-muscles.xml +++ b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-muscle.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml similarity index 92% rename from data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml rename to data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml index 346b141..e2a29af 100644 --- a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml +++ b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">sbem-6dpf-1-whole-segmented-nuclei-labels.h5</hdf5> + <hdf5 type="relative">sbem-6dpf-1-whole-segmented-nuclei.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-tissue.xml similarity index 91% rename from data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml rename to data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-tissue.xml index 390dbdb..767f2a6 100644 --- a/data/0.0.0/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml +++ b/data/0.0.0/images/local/sbem-6dpf-1-whole-segmented-tissue.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-tissue-labels.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-tissue.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Beta3-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Beta3-MED.xml deleted file mode 100644 index 38f3c16..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Beta3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Beta3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Bmpr1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Bmpr1-MED.xml deleted file mode 100644 index 29b632a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Bmpr1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Bmpr1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Brn3a-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Brn3a-MED.xml deleted file mode 100644 index a2eb218..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Brn3a-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Brn3a-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ChAT-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ChAT-MED.xml deleted file mode 100644 index 571ce92..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ChAT-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ChAT-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Chx10-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Chx10-MED.xml deleted file mode 100644 index b0b43ce..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Chx10-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Chx10-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Dach-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Dach-MED.xml deleted file mode 100644 index c262436..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Dach-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Dach-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR1-MED.xml deleted file mode 100644 index f5df566..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR10-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR10-MED.xml deleted file mode 100644 index a7cdae3..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR10-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR10-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR12-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR12-MED.xml deleted file mode 100644 index e86a227..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR13-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR13-MED.xml deleted file mode 100644 index 950943d..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR13-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR13-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR16-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR16-MED.xml deleted file mode 100644 index 6d1c986..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR16-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR16-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR19-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR19-MED.xml deleted file mode 100644 index f35a39a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR19-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR19-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR2-MED.xml deleted file mode 100644 index de9fa7b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR20-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR20-MED.xml deleted file mode 100644 index bd66aaf..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR20-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR20-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR22-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR22-MED.xml deleted file mode 100644 index d1c41ba..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR22-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR22-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR25-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR25-MED.xml deleted file mode 100644 index 815ec8e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR25-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR25-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR29-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR29-MED.xml deleted file mode 100644 index c60a172..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR29-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR29-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR3-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR3-MED.xml deleted file mode 100644 index 01c3f3c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR30-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR30-MED.xml deleted file mode 100644 index f612019..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR30-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR30-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR31-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR31-MED.xml deleted file mode 100644 index 1742f9c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR31-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR31-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR32-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR32-MED.xml deleted file mode 100644 index a0b995c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR32-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR32-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR34-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR34-MED.xml deleted file mode 100644 index 2a0840b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR34-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR34-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR39-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR39-MED.xml deleted file mode 100644 index a312e5d..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR39-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR39-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR4-MED.xml deleted file mode 100644 index 77ae64c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR46-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR46-MED.xml deleted file mode 100644 index b408c01..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR46-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR46-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR54-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR54-MED.xml deleted file mode 100644 index 7f7483e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR54-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR54-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR57-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR57-MED.xml deleted file mode 100644 index 0c6a4e6..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR57-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR57-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR6-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR6-MED.xml deleted file mode 100644 index 2568542..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR62-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR62-MED.xml deleted file mode 100644 index e227b51..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR62-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR62-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR64-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR64-MED.xml deleted file mode 100644 index 61245e8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR64-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR64-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR69-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR69-MED.xml deleted file mode 100644 index f73e8a6..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR69-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR69-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR71-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR71-MED.xml deleted file mode 100644 index ac65b64..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR71-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR71-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR8-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR8-MED.xml deleted file mode 100644 index c7c3de6..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR8-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR8-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ENR9-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ENR9-MED.xml deleted file mode 100644 index 6d75b0d..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ENR9-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ENR9-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ElaV-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ElaV-MED.xml deleted file mode 100644 index d2af5cb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ElaV-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ElaV-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-FOR-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-FOR-MED.xml deleted file mode 100644 index cd63ffa..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-FOR-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-FOR-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-FVRI-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-FVRI-MED.xml deleted file mode 100644 index 650f1d8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-FVRI-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-FVRI-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-FoxD3-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-FoxD3-MED.xml deleted file mode 100644 index e77d4fb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-FoxD3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-FoxD3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-FoxN4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-FoxN4-MED.xml deleted file mode 100644 index edc045c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-FoxN4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-FoxN4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GAD-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GAD-MED.xml deleted file mode 100644 index 7bede9b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GAD-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GAD-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GCB-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GCB-MED.xml deleted file mode 100644 index 517b235..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GCB-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GCB-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GCD-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GCD-MED.xml deleted file mode 100644 index 9bdb0af..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GCD-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GCD-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GPCR2-MED.xml deleted file mode 100644 index 42e15b7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GPCR2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR209-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GPCR209-MED.xml deleted file mode 100644 index 414f184..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR209-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GPCR209-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR210-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GPCR210-MED.xml deleted file mode 100644 index 4979e5a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR210-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GPCR210-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR32-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GPCR32-MED.xml deleted file mode 100644 index 68e05ba..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GPCR32-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GPCR32-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GPPCR21-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GPPCR21-MED.xml deleted file mode 100644 index 358cc7b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GPPCR21-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GPPCR21-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Gata123-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Gata123-MED.xml deleted file mode 100644 index 85702cd..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Gata123-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Gata123-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Glt1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Glt1-MED.xml deleted file mode 100644 index 6dc8ac1..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Glt1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Glt1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GlyT-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GlyT-MED.xml deleted file mode 100644 index 49565c0..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GlyT-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GlyT-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GnRH-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GnRH-MED.xml deleted file mode 100644 index 0118c6e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GnRH-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GnRH-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-GnrhR-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-GnrhR-MED.xml deleted file mode 100644 index 6713bc2..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-GnrhR-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-GnrhR-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Grm7-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Grm7-MED.xml deleted file mode 100644 index e029d26..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Grm7-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Grm7-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Gucy-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Gucy-MED.xml deleted file mode 100644 index 2d3f1f3..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Gucy-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Gucy-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-HCN1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-HCN1-MED.xml deleted file mode 100644 index 2f3373a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-HCN1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-HCN1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-HNF6-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-HNF6-MED.xml deleted file mode 100644 index 3c708f5..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-HNF6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-HNF6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Hand-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Hand-MED.xml deleted file mode 100644 index 3daed4b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Hand-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Hand-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Hb9-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Hb9-MED.xml deleted file mode 100644 index fcdbd73..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Hb9-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Hb9-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Hox5-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Hox5-MED.xml deleted file mode 100644 index 0f547ae..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Hox5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Hox5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Hox7-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Hox7-MED.xml deleted file mode 100644 index 9406acd..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Hox7-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Hox7-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Hr38-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Hr38-MED.xml deleted file mode 100644 index 9f7bef7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Hr38-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Hr38-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Isl-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Isl-MED.xml deleted file mode 100644 index bb4dcab..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Isl-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Isl-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Kv33b-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Kv33b-MED.xml deleted file mode 100644 index 7b24ec8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Kv33b-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Kv33b-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Kv33e-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Kv33e-MED.xml deleted file mode 100644 index 3fdefa8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Kv33e-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Kv33e-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Lhx15-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Lhx15-MED.xml deleted file mode 100644 index 3dff25a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Lhx15-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Lhx15-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Lhx2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Lhx2-MED.xml deleted file mode 100644 index 98af4db..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Lhx2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Lhx2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Lhx3-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Lhx3-MED.xml deleted file mode 100644 index e1db631..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Lhx3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Lhx3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Lmo4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Lmo4-MED.xml deleted file mode 100644 index 8fd7798..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Lmo4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Lmo4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Lmx1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Lmx1-MED.xml deleted file mode 100644 index 85bfc30..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Lmx1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Lmx1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Loc77859-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Loc77859-MED.xml deleted file mode 100644 index 99784db..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Loc77859-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Loc77859-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-MHCL4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-MHCL4-MED.xml deleted file mode 100644 index ebfce35..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-MHCL4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-MHCL4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-MRLC2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-MRLC2-MED.xml deleted file mode 100644 index b274666..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-MRLC2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-MRLC2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Maf-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Maf-MED.xml deleted file mode 100644 index 28a48eb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Maf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Maf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Mitf-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Mitf-MED.xml deleted file mode 100644 index b804f33..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Mitf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Mitf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Munc22-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Munc22-MED.xml deleted file mode 100644 index ea3d697..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Munc22-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Munc22-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NMDAR-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NMDAR-MED.xml deleted file mode 100644 index 4ab11e2..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NMDAR-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NMDAR-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV1-MED.xml deleted file mode 100644 index 4259b63..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV15-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV15-MED.xml deleted file mode 100644 index d37d37b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV15-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV15-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV18-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV18-MED.xml deleted file mode 100644 index 60dd584..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV18-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV18-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV2-MED.xml deleted file mode 100644 index 54e176d..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV29-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV29-MED.xml deleted file mode 100644 index 0955d47..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV29-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV29-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV45-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV45-MED.xml deleted file mode 100644 index 0584d73..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV45-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV45-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV50-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV50-MED.xml deleted file mode 100644 index 2d1a2ea..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV50-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV50-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV52-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV52-MED.xml deleted file mode 100644 index 94c1bd7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV52-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV52-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NOV6-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NOV6-MED.xml deleted file mode 100644 index 6396e23..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NOV6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NOV6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NPR1a-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NPR1a-MED.xml deleted file mode 100644 index e1bc9f0..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NPR1a-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NPR1a-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Netrin-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Netrin-MED.xml deleted file mode 100644 index 6f27834..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Netrin-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Netrin-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-NeuroD-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-NeuroD-MED.xml deleted file mode 100644 index c84542a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-NeuroD-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-NeuroD-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Ngb-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Ngb-MED.xml deleted file mode 100644 index 30eda0e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Ngb-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Ngb-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Olig-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Olig-MED.xml deleted file mode 100644 index d4ccfa5..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Olig-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Olig-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-P56-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-P56-MED.xml deleted file mode 100644 index e4774db..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-P56-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-P56-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-PCDH15-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-PCDH15-MED.xml deleted file mode 100644 index 3904bde..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-PCDH15-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-PCDH15-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-PDF-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-PDF-MED.xml deleted file mode 100644 index 67b0e14..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-PDF-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-PDF-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-PLCg-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-PLCg-MED.xml deleted file mode 100644 index d89a3e7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-PLCg-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-PLCg-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Pax258-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Pax258-MED.xml deleted file mode 100644 index 9dc1203..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Pax258-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Pax258-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Pax6-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Pax6-MED.xml deleted file mode 100644 index 25dbe8f..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Pax6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Pax6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Pde9-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Pde9-MED.xml deleted file mode 100644 index 046fda8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Pde9-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Pde9-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Pea3-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Pea3-MED.xml deleted file mode 100644 index ff845a7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Pea3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Pea3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Phc2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Phc2-MED.xml deleted file mode 100644 index 5bb5f09..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Phc2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Phc2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Phox2b-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Phox2b-MED.xml deleted file mode 100644 index b8a19ac..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Phox2b-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Phox2b-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Pikachu-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Pikachu-MED.xml deleted file mode 100644 index dbcd8c7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Pikachu-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Pikachu-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-PitxB-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-PitxB-MED.xml deleted file mode 100644 index 66a9851..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-PitxB-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-PitxB-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Prdm8-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Prdm8-MED.xml deleted file mode 100644 index 000f6a4..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Prdm8-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Prdm8-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Prox-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Prox-MED.xml deleted file mode 100644 index 8c93343..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Prox-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Prox-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Ptf1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Ptf1-MED.xml deleted file mode 100644 index 977d2bc..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Ptf1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Ptf1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-RIMS-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-RIMS-MED.xml deleted file mode 100644 index 90f47bb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-RIMS-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-RIMS-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Rab3-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Rab3-MED.xml deleted file mode 100644 index 90ec3fb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Rab3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Rab3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Robo-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Robo-MED.xml deleted file mode 100644 index 47a22f9..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Robo-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Robo-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Scn8aa-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Scn8aa-MED.xml deleted file mode 100644 index a3bed18..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Scn8aa-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Scn8aa-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Sema2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Sema2-MED.xml deleted file mode 100644 index 918f8ea..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Sema2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Sema2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Sim1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Sim1-MED.xml deleted file mode 100644 index 0cc7889..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Sim1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Sim1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Slit-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Slit-MED.xml deleted file mode 100644 index a1ed2ff..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Slit-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Slit-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Sox2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Sox2-MED.xml deleted file mode 100644 index 0e3b5bf..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Sox2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Sox2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Sox4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Sox4-MED.xml deleted file mode 100644 index bf6409f..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Sox4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Sox4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-SoxB12-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-SoxB12-MED.xml deleted file mode 100644 index 3924138..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-SoxB12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-SoxB12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-SoxB2-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-SoxB2-MED.xml deleted file mode 100644 index 50aa201..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-SoxB2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-SoxB2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Sp8-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Sp8-MED.xml deleted file mode 100644 index 81b7ea1..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Sp8-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Sp8-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Syt-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Syt-MED.xml deleted file mode 100644 index 46e1534..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Syt-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Syt-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Syt12-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Syt12-MED.xml deleted file mode 100644 index 23866d8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Syt12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Syt12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Syt7-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Syt7-MED.xml deleted file mode 100644 index c7a570c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Syt7-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Syt7-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Syta-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Syta-MED.xml deleted file mode 100644 index 2efad9b..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Syta-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Syta-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-TIMP-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-TIMP-MED.xml deleted file mode 100644 index f4980ad..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-TIMP-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-TIMP-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-TRPV4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-TRPV4-MED.xml deleted file mode 100644 index 07a0513..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-TRPV4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-TRPV4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-TRPV5-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-TRPV5-MED.xml deleted file mode 100644 index d10142e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-TRPV5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-TRPV5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Tal-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Tal-MED.xml deleted file mode 100644 index 785aaab..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Tal-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Tal-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Tbh-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Tbh-MED.xml deleted file mode 100644 index f0c6d36..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Tbh-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Tbh-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Tbx20-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Tbx20-MED.xml deleted file mode 100644 index caea962..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Tbx20-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Tbx20-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-TrpH-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-TrpH-MED.xml deleted file mode 100644 index b331331..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-TrpH-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-TrpH-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-TrpV-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-TrpV-MED.xml deleted file mode 100644 index eba08bb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-TrpV-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-TrpV-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Twist-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Twist-MED.xml deleted file mode 100644 index 7ca97e3..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Twist-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Twist-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-UNCS-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-UNCS-MED.xml deleted file mode 100644 index cd9a2ef..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-UNCS-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-UNCS-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-VAChT-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-VAChT-MED.xml deleted file mode 100644 index 4c869d5..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-VAChT-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-VAChT-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-VAT1L-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-VAT1L-MED.xml deleted file mode 100644 index 8bc5dbd..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-VAT1L-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-VAT1L-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-VGluT-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-VGluT-MED.xml deleted file mode 100644 index b0a8895..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-VGluT-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-VGluT-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-VegfR-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-VegfR-MED.xml deleted file mode 100644 index 5e1134a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-VegfR-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-VegfR-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Wnt16-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Wnt16-MED.xml deleted file mode 100644 index e936d72..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Wnt16-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Wnt16-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-Wnt5-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-Wnt5-MED.xml deleted file mode 100644 index 9fed482..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-Wnt5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-Wnt5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ascI-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ascI-MED.xml deleted file mode 100644 index 8444060..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ascI-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ascI-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ascII-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ascII-MED.xml deleted file mode 100644 index 3f25602..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ascII-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ascII-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-bsx-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-bsx-MED.xml deleted file mode 100644 index 94929da..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-bsx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-bsx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-catL-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-catL-MED.xml deleted file mode 100644 index 120c94a..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-catL-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-catL-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-cnga-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-cnga-MED.xml deleted file mode 100644 index 2154390..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-cnga-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-cnga-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-dbx1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-dbx1-MED.xml deleted file mode 100644 index 8f1406d..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-dbx1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-dbx1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-delta-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-delta-MED.xml deleted file mode 100644 index 4492a90..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-delta-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-delta-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - 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<name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-edu3to4at6dpf-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-edu3to4at6dpf-MED.xml deleted file mode 100644 index 814ab8e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-edu3to4at6dpf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-edu3to4at6dpf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-edu4to5at6dpf-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-edu4to5at6dpf-MED.xml deleted file mode 100644 index 55fcd93..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-edu4to5at6dpf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-edu4to5at6dpf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-edu5to6at6dpf-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-edu5to6at6dpf-MED.xml deleted file mode 100644 index 45c5d73..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-edu5to6at6dpf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-edu5to6at6dpf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-eve-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-eve-MED.xml deleted file mode 100644 index a0649fd..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-eve-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-eve-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-eya-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-eya-MED.xml deleted file mode 100644 index 69435e7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-eya-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-eya-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-fezf-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-fezf-MED.xml deleted file mode 100644 index 7fd9120..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-fezf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-fezf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-gpb-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-gpb-MED.xml deleted file mode 100644 index 74267aa..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-gpb-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-gpb-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-gsx-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-gsx-MED.xml deleted file mode 100644 index 7e8054f..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-gsx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-gsx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-hox1-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-hox1-MED.xml deleted file mode 100644 index 118a0be..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-hox1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-hox1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-irx-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-irx-MED.xml deleted file mode 100644 index 65944d2..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-irx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-irx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-irx2546-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-irx2546-MED.xml deleted file mode 100644 index ee77c7e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-irx2546-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-irx2546-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-lbx1b-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-lbx1b-MED.xml deleted file mode 100644 index 56386b3..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-lbx1b-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-lbx1b-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-lhx6-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-lhx6-MED.xml deleted file mode 100644 index c0b93d3..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-lhx6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-lhx6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-mecom-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-mecom-MED.xml deleted file mode 100644 index 9b7f94e..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-mecom-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-mecom-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-msx-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-msx-MED.xml deleted file mode 100644 index f4a3ead..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-msx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-msx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-muncB-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-muncB-MED.xml deleted file mode 100644 index 4525ca8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-muncB-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-muncB-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-nAchR-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-nAchR-MED.xml deleted file mode 100644 index 133a5e7..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-nAchR-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-nAchR-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-neog-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-neog-MED.xml deleted file mode 100644 index 2b25fa8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-neog-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-neog-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ngn-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ngn-MED.xml deleted file mode 100644 index b6f6720..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ngn-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ngn-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-nk21-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-nk21-MED.xml deleted file mode 100644 index 213c4e2..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-nk21-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-nk21-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-nk22-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-nk22-MED.xml deleted file mode 100644 index 3d24481..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-nk22-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-nk22-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-nk6-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-nk6-MED.xml deleted file mode 100644 index f14bcd8..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-nk6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-nk6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ntrps-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ntrps-MED.xml deleted file mode 100644 index b6d9c46..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ntrps-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ntrps-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-otp-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-otp-MED.xml deleted file mode 100644 index cd8e688..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-otp-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-otp-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-paraxis-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-paraxis-MED.xml deleted file mode 100644 index 4142617..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-paraxis-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-paraxis-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-ref-SPM.xml b/data/0.0.0/images/prospr-6dpf-1-whole-ref-SPM.xml deleted file mode 100644 index 8972abb..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-ref-SPM.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-ref-SPM.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml b/data/0.0.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml deleted file mode 100644 index c756b3c..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-CrypticSegment.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml b/data/0.0.0/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml deleted file mode 100644 index d97dd9d..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-RestOfAnimal.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml b/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml deleted file mode 100644 index 7f409ff..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-Stomodeum.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-VNC.xml b/data/0.0.0/images/prospr-6dpf-1-whole-segmented-VNC.xml deleted file mode 100644 index 77ea228..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-segmented-VNC.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-segmented-VNC.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-sert-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-sert-MED.xml deleted file mode 100644 index 9b0cae0..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-sert-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-sert-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-six12-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-six12-MED.xml deleted file mode 100644 index 750fd16..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-six12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-six12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-six4-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-six4-MED.xml deleted file mode 100644 index a0c90e9..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-six4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-six4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-tlx-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-tlx-MED.xml deleted file mode 100644 index 997eb74..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-tlx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-tlx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-trk-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-trk-MED.xml deleted file mode 100644 index 597ec82..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-trk-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-trk-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/images/prospr-6dpf-1-whole-uncx-MED.xml b/data/0.0.0/images/prospr-6dpf-1-whole-uncx-MED.xml deleted file mode 100644 index 7729441..0000000 --- a/data/0.0.0/images/prospr-6dpf-1-whole-uncx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">prospr-6dpf-1-whole-uncx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.0.0/misc/bdv_server.txt b/data/0.0.0/misc/bdv_server.txt deleted file mode 100644 index 247ae97..0000000 --- a/data/0.0.0/misc/bdv_server.txt +++ /dev/null @@ -1,206 +0,0 @@ -sbem-6dpf-1-whole-raw ../images/sbem-6dpf-1-whole-raw.xml -prospr-6dpf-1-whole-Glt1-MED ../images/prospr-6dpf-1-whole-Glt1-MED.xml -prospr-6dpf-1-whole-AChE-MED ../images/prospr-6dpf-1-whole-AChE-MED.xml -prospr-6dpf-1-whole-ANPRA-MED ../images/prospr-6dpf-1-whole-ANPRA-MED.xml -prospr-6dpf-1-whole-ANPRB-MED ../images/prospr-6dpf-1-whole-ANPRB-MED.xml -prospr-6dpf-1-whole-AP2-MED ../images/prospr-6dpf-1-whole-AP2-MED.xml -prospr-6dpf-1-whole-ASCb-MED ../images/prospr-6dpf-1-whole-ASCb-MED.xml -prospr-6dpf-1-whole-AcTub-MED ../images/prospr-6dpf-1-whole-AcTub-MED.xml -prospr-6dpf-1-whole-AllCR1-MED ../images/prospr-6dpf-1-whole-AllCR1-MED.xml -prospr-6dpf-1-whole-AllCR2-MED ../images/prospr-6dpf-1-whole-AllCR2-MED.xml -prospr-6dpf-1-whole-Arx-MED ../images/prospr-6dpf-1-whole-Arx-MED.xml -prospr-6dpf-1-whole-Ash-MED ../images/prospr-6dpf-1-whole-Ash-MED.xml -prospr-6dpf-1-whole-BAIAP-MED ../images/prospr-6dpf-1-whole-BAIAP-MED.xml -prospr-6dpf-1-whole-BarH1-MED ../images/prospr-6dpf-1-whole-BarH1-MED.xml -prospr-6dpf-1-whole-Beta3-MED ../images/prospr-6dpf-1-whole-Beta3-MED.xml -prospr-6dpf-1-whole-Bmpr1-MED ../images/prospr-6dpf-1-whole-Bmpr1-MED.xml -prospr-6dpf-1-whole-Brn3a-MED ../images/prospr-6dpf-1-whole-Brn3a-MED.xml -prospr-6dpf-1-whole-COE-MED ../images/prospr-6dpf-1-whole-COE-MED.xml -prospr-6dpf-1-whole-Cal2-MED ../images/prospr-6dpf-1-whole-Cal2-MED.xml -prospr-6dpf-1-whole-Calmodulin-MED ../images/prospr-6dpf-1-whole-Calmodulin-MED.xml -prospr-6dpf-1-whole-ChAT-MED ../images/prospr-6dpf-1-whole-ChAT-MED.xml -prospr-6dpf-1-whole-Chx10-MED ../images/prospr-6dpf-1-whole-Chx10-MED.xml -prospr-6dpf-1-whole-Dach-MED ../images/prospr-6dpf-1-whole-Dach-MED.xml -prospr-6dpf-1-whole-DbhLike-MED ../images/prospr-6dpf-1-whole-DbhLike-MED.xml -prospr-6dpf-1-whole-DopaRD2-MED ../images/prospr-6dpf-1-whole-DopaRD2-MED.xml -prospr-6dpf-1-whole-ENR1-MED ../images/prospr-6dpf-1-whole-ENR1-MED.xml -prospr-6dpf-1-whole-ENR10-MED ../images/prospr-6dpf-1-whole-ENR10-MED.xml -prospr-6dpf-1-whole-ENR12-MED ../images/prospr-6dpf-1-whole-ENR12-MED.xml -prospr-6dpf-1-whole-ENR13-MED ../images/prospr-6dpf-1-whole-ENR13-MED.xml -prospr-6dpf-1-whole-ENR16-MED ../images/prospr-6dpf-1-whole-ENR16-MED.xml -prospr-6dpf-1-whole-ENR19-MED ../images/prospr-6dpf-1-whole-ENR19-MED.xml -prospr-6dpf-1-whole-ENR2-MED ../images/prospr-6dpf-1-whole-ENR2-MED.xml -prospr-6dpf-1-whole-ENR20-MED ../images/prospr-6dpf-1-whole-ENR20-MED.xml -prospr-6dpf-1-whole-ENR22-MED ../images/prospr-6dpf-1-whole-ENR22-MED.xml -prospr-6dpf-1-whole-ENR25-MED ../images/prospr-6dpf-1-whole-ENR25-MED.xml -prospr-6dpf-1-whole-ENR29-MED ../images/prospr-6dpf-1-whole-ENR29-MED.xml -prospr-6dpf-1-whole-ENR3-MED ../images/prospr-6dpf-1-whole-ENR3-MED.xml -prospr-6dpf-1-whole-ENR30-MED ../images/prospr-6dpf-1-whole-ENR30-MED.xml -prospr-6dpf-1-whole-ENR31-MED ../images/prospr-6dpf-1-whole-ENR31-MED.xml -prospr-6dpf-1-whole-ENR32-MED ../images/prospr-6dpf-1-whole-ENR32-MED.xml -prospr-6dpf-1-whole-ENR34-MED ../images/prospr-6dpf-1-whole-ENR34-MED.xml -prospr-6dpf-1-whole-ENR39-MED ../images/prospr-6dpf-1-whole-ENR39-MED.xml -prospr-6dpf-1-whole-ENR4-MED ../images/prospr-6dpf-1-whole-ENR4-MED.xml -prospr-6dpf-1-whole-ENR46-MED ../images/prospr-6dpf-1-whole-ENR46-MED.xml -prospr-6dpf-1-whole-ENR54-MED ../images/prospr-6dpf-1-whole-ENR54-MED.xml -prospr-6dpf-1-whole-ENR57-MED ../images/prospr-6dpf-1-whole-ENR57-MED.xml -prospr-6dpf-1-whole-ENR6-MED ../images/prospr-6dpf-1-whole-ENR6-MED.xml -prospr-6dpf-1-whole-ENR62-MED ../images/prospr-6dpf-1-whole-ENR62-MED.xml -prospr-6dpf-1-whole-ENR64-MED ../images/prospr-6dpf-1-whole-ENR64-MED.xml -prospr-6dpf-1-whole-ENR69-MED ../images/prospr-6dpf-1-whole-ENR69-MED.xml -prospr-6dpf-1-whole-ENR71-MED ../images/prospr-6dpf-1-whole-ENR71-MED.xml -prospr-6dpf-1-whole-ENR8-MED ../images/prospr-6dpf-1-whole-ENR8-MED.xml -prospr-6dpf-1-whole-ENR9-MED ../images/prospr-6dpf-1-whole-ENR9-MED.xml -prospr-6dpf-1-whole-ElaV-MED ../images/prospr-6dpf-1-whole-ElaV-MED.xml -prospr-6dpf-1-whole-FOR-MED ../images/prospr-6dpf-1-whole-FOR-MED.xml -prospr-6dpf-1-whole-FVRI-MED ../images/prospr-6dpf-1-whole-FVRI-MED.xml -prospr-6dpf-1-whole-FoxD3-MED ../images/prospr-6dpf-1-whole-FoxD3-MED.xml -prospr-6dpf-1-whole-FoxN4-MED ../images/prospr-6dpf-1-whole-FoxN4-MED.xml -prospr-6dpf-1-whole-GAD-MED ../images/prospr-6dpf-1-whole-GAD-MED.xml -prospr-6dpf-1-whole-GCB-MED ../images/prospr-6dpf-1-whole-GCB-MED.xml -prospr-6dpf-1-whole-GCD-MED ../images/prospr-6dpf-1-whole-GCD-MED.xml -prospr-6dpf-1-whole-GPCR2-MED ../images/prospr-6dpf-1-whole-GPCR2-MED.xml -prospr-6dpf-1-whole-GPCR203-MED ../images/prospr-6dpf-1-whole-GPCR203-MED.xml -prospr-6dpf-1-whole-GPCR209-MED ../images/prospr-6dpf-1-whole-GPCR209-MED.xml -prospr-6dpf-1-whole-GPCR210-MED ../images/prospr-6dpf-1-whole-GPCR210-MED.xml -prospr-6dpf-1-whole-GPCR32-MED ../images/prospr-6dpf-1-whole-GPCR32-MED.xml -prospr-6dpf-1-whole-GPPCR21-MED ../images/prospr-6dpf-1-whole-GPPCR21-MED.xml -prospr-6dpf-1-whole-Gata123-MED ../images/prospr-6dpf-1-whole-Gata123-MED.xml -prospr-6dpf-1-whole-GlyT-MED ../images/prospr-6dpf-1-whole-GlyT-MED.xml -prospr-6dpf-1-whole-GnRH-MED ../images/prospr-6dpf-1-whole-GnRH-MED.xml -prospr-6dpf-1-whole-GnrhR-MED ../images/prospr-6dpf-1-whole-GnrhR-MED.xml -prospr-6dpf-1-whole-Grm7-MED ../images/prospr-6dpf-1-whole-Grm7-MED.xml -prospr-6dpf-1-whole-Gucy-MED ../images/prospr-6dpf-1-whole-Gucy-MED.xml -prospr-6dpf-1-whole-HCN1-MED ../images/prospr-6dpf-1-whole-HCN1-MED.xml 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-sbem-6dpf-1-whole-segmented-muscles ../segmentations/sbem-6dpf-1-whole-segmented-muscles.xml diff --git a/data/0.0.0/misc/dynamic_segmentations.json b/data/0.0.0/misc/dynamic_segmentations.json new file mode 100644 index 0000000..b3dacbc --- /dev/null +++ b/data/0.0.0/misc/dynamic_segmentations.json @@ -0,0 +1,22 @@ +{ + "sbem-6dpf-1-whole-segmented-cells": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/proofread_cells" + ], + "Postprocess": { + "BoundaryKey": "volumes/affinities/s1", + "BoundaryPath": "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "LabelSegmentation": false, + "MaxSegmentNumber": 32700 + }, + "TableUpdateFunction": "make_cell_tables" + }, + "sbem-6dpf-1-whole-segmented-nuclei": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/nuclei" + ], + "TableUpdateFunction": "make_nuclei_tables" + } +} \ No newline at end of file -- GitLab