From 7d86997b416b476614c458b6f9d5aa84365d6233 Mon Sep 17 00:00:00 2001 From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de> Date: Thu, 6 Feb 2020 19:38:49 +0100 Subject: [PATCH] Migrate 0.5.5 --- data/0.5.5/images/images.json | 1805 +++++++++++++++++ .../images/local/prospr-6dpf-1-whole-ache.xml | 39 + .../local/prospr-6dpf-1-whole-allcr1.xml | 39 + .../local/prospr-6dpf-1-whole-allcr2.xml | 39 + .../local/prospr-6dpf-1-whole-anpra.xml | 39 + .../local/prospr-6dpf-1-whole-anprb.xml | 39 + .../prospr-6dpf-1-whole-ap2.xml} | 2 +- .../prospr-6dpf-1-whole-arx.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-ascb.xml | 39 + .../images/local/prospr-6dpf-1-whole-asci.xml | 39 + .../local/prospr-6dpf-1-whole-ascii.xml | 39 + .../images/local/prospr-6dpf-1-whole-ash.xml | 39 + .../local/prospr-6dpf-1-whole-asicalpha.xml | 39 + .../images/local/prospr-6dpf-1-whole-ato2.xml | 39 + .../local/prospr-6dpf-1-whole-baiap.xml | 39 + .../local/prospr-6dpf-1-whole-barh1.xml | 39 + 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.../images/local/prospr-6dpf-1-whole-olig.xml | 39 + .../local/prospr-6dpf-1-whole-olm2a.xml | 39 + .../images/local/prospr-6dpf-1-whole-otp.xml | 39 + .../images/local/prospr-6dpf-1-whole-p56.xml | 39 + .../local/prospr-6dpf-1-whole-paraxis.xml | 39 + .../local/prospr-6dpf-1-whole-patched.xml | 39 + .../local/prospr-6dpf-1-whole-pax258.xml | 39 + .../images/local/prospr-6dpf-1-whole-pax6.xml | 39 + .../local/prospr-6dpf-1-whole-pcdh15.xml | 39 + .../images/local/prospr-6dpf-1-whole-pde9.xml | 39 + .../images/local/prospr-6dpf-1-whole-pdf.xml | 39 + .../images/local/prospr-6dpf-1-whole-pea3.xml | 39 + .../images/local/prospr-6dpf-1-whole-pgam.xml | 39 + .../images/local/prospr-6dpf-1-whole-phc2.xml | 39 + .../local/prospr-6dpf-1-whole-phox2b.xml | 39 + .../local/prospr-6dpf-1-whole-pikachu.xml | 39 + .../local/prospr-6dpf-1-whole-pitxb.xml | 39 + .../images/local/prospr-6dpf-1-whole-pkd1.xml | 39 + .../images/local/prospr-6dpf-1-whole-pkd2.xml | 39 + .../images/local/prospr-6dpf-1-whole-plcg.xml | 39 + .../images/local/prospr-6dpf-1-whole-ppib.xml | 39 + .../local/prospr-6dpf-1-whole-prdm8.xml | 39 + .../images/local/prospr-6dpf-1-whole-prox.xml | 39 + .../local/prospr-6dpf-1-whole-psmf1.xml | 39 + .../images/local/prospr-6dpf-1-whole-ptf1.xml | 39 + .../images/local/prospr-6dpf-1-whole-rab3.xml | 39 + .../images/local/prospr-6dpf-1-whole-rims.xml | 39 + .../images/local/prospr-6dpf-1-whole-robo.xml | 39 + .../images/local/prospr-6dpf-1-whole-rpc2.xml | 39 + .../prospr-6dpf-1-whole-rx.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-ryr2.xml | 39 + .../local/prospr-6dpf-1-whole-scn8aa.xml | 39 + ...rospr-6dpf-1-whole-segmented-allglands.xml | 39 + ...-6dpf-1-whole-segmented-crypticsegment.xml | 39 + .../prospr-6dpf-1-whole-segmented-foregut.xml | 39 + .../prospr-6dpf-1-whole-segmented-glands.xml | 39 + .../prospr-6dpf-1-whole-segmented-head.xml | 39 + ...6dpf-1-whole-segmented-lateralectoderm.xml | 39 + ...spr-6dpf-1-whole-segmented-prospr6-ref.xml | 39 + ...prospr-6dpf-1-whole-segmented-pygidium.xml | 39 + ...pr-6dpf-1-whole-segmented-restofanimal.xml | 39 + .../prospr-6dpf-1-whole-segmented-vnc.xml | 39 + .../local/prospr-6dpf-1-whole-sema2.xml | 39 + .../images/local/prospr-6dpf-1-whole-sert.xml | 39 + .../images/local/prospr-6dpf-1-whole-sim1.xml | 39 + .../local/prospr-6dpf-1-whole-six12.xml | 39 + .../images/local/prospr-6dpf-1-whole-six4.xml | 39 + .../images/local/prospr-6dpf-1-whole-slit.xml | 39 + .../images/local/prospr-6dpf-1-whole-snd1.xml | 39 + .../images/local/prospr-6dpf-1-whole-sox2.xml | 39 + .../images/local/prospr-6dpf-1-whole-sox4.xml | 39 + .../local/prospr-6dpf-1-whole-soxb12.xml | 39 + .../local/prospr-6dpf-1-whole-soxb2.xml | 39 + .../images/local/prospr-6dpf-1-whole-sp8.xml | 39 + .../local/prospr-6dpf-1-whole-stathmin.xml | 39 + .../prospr-6dpf-1-whole-synaptopodin.xml | 39 + .../images/local/prospr-6dpf-1-whole-syt.xml | 39 + .../local/prospr-6dpf-1-whole-syt12.xml | 39 + .../images/local/prospr-6dpf-1-whole-syt7.xml | 39 + .../images/local/prospr-6dpf-1-whole-syta.xml | 39 + .../images/local/prospr-6dpf-1-whole-tal.xml | 39 + .../images/local/prospr-6dpf-1-whole-tbh.xml | 39 + .../local/prospr-6dpf-1-whole-tbx20.xml | 39 + .../prospr-6dpf-1-whole-th.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-timp.xml | 39 + .../images/local/prospr-6dpf-1-whole-tlx.xml | 39 + .../local/prospr-6dpf-1-whole-tmtc3.xml | 39 + .../images/local/prospr-6dpf-1-whole-trk.xml | 39 + .../images/local/prospr-6dpf-1-whole-trph.xml | 39 + .../images/local/prospr-6dpf-1-whole-trpv.xml | 39 + .../local/prospr-6dpf-1-whole-trpv4.xml | 39 + .../local/prospr-6dpf-1-whole-trpv5.xml | 39 + .../local/prospr-6dpf-1-whole-twist.xml | 39 + .../local/prospr-6dpf-1-whole-unc22.xml | 39 + .../images/local/prospr-6dpf-1-whole-uncs.xml | 39 + .../images/local/prospr-6dpf-1-whole-uncx.xml | 39 + .../images/local/prospr-6dpf-1-whole-upp.xml | 39 + .../local/prospr-6dpf-1-whole-usp9x.xml | 39 + .../local/prospr-6dpf-1-whole-vacht.xml | 39 + .../local/prospr-6dpf-1-whole-vat1l.xml | 39 + .../local/prospr-6dpf-1-whole-vegfr.xml | 39 + .../local/prospr-6dpf-1-whole-vglut.xml | 39 + .../local/prospr-6dpf-1-whole-wnt16.xml | 39 + .../images/local/prospr-6dpf-1-whole-wnt5.xml | 39 + .../{ => local}/sbem-6dpf-1-whole-raw.xml | 2 +- .../sbem-6dpf-1-whole-segmented-cells.xml} | 2 +- ...sbem-6dpf-1-whole-segmented-chromatin.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-cilia.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-inside.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-muscle.xml | 2 +- .../sbem-6dpf-1-whole-segmented-neuropil.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-nuclei.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-outside.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-resin.xml} | 2 +- .../sbem-6dpf-1-whole-segmented-tissue.xml} | 2 +- .../images/prospr-6dpf-1-whole-ASCb-MED.xml | 39 - .../images/prospr-6dpf-1-whole-AllCR1-MED.xml | 39 - .../images/prospr-6dpf-1-whole-AllCR2-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Arx-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Ash-MED.xml | 39 - .../images/prospr-6dpf-1-whole-BAIAP-MED.xml | 39 - .../images/prospr-6dpf-1-whole-BarH1-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Beta3-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Bmpr1-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Brn124-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Brn3a-MED.xml | 39 - .../images/prospr-6dpf-1-whole-COE-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Cal2-MED.xml | 39 - .../prospr-6dpf-1-whole-Calmodulin-MED.xml | 39 - .../images/prospr-6dpf-1-whole-ChAT-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Chx10-MED.xml | 39 - .../images/prospr-6dpf-1-whole-Dach-MED.xml | 39 - .../prospr-6dpf-1-whole-DbhLike-MED.xml | 39 - .../prospr-6dpf-1-whole-DopaRD2-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR1-PGAM-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR10-UPP-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR12-UNC22-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR13-NDUS1-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR16-ODO2-MED.xml | 39 - ...prospr-6dpf-1-whole-ENR19-FboxLike-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR2-RYR2-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR20-PPIB-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR22-CO1A1-MED.xml | 39 - ...pr-6dpf-1-whole-ENR25-Synaptopodin-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR29-USP9X-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR3-JKIP3-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR30-CCG5-MED.xml | 39 - ...spr-6dpf-1-whole-ENR31-Leucin-rich-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR32-GRIK3-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR34-MTHFSD-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR39-RPC2-MED.xml | 39 - .../prospr-6dpf-1-whole-ENR4-SND1-MED.xml | 39 - ...spr-6dpf-1-whole-ENR46-Calexcitin2-MED.xml | 39 - ...ospr-6dpf-1-whole-ENR54-Boule-like-MED.xml | 39 - ...r-6dpf-1-whole-ENR57-Junctophilin1-MED.xml | 39 - 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"local/sbem-6dpf-1-whole-segmented-nuclei.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-nuclei" + }, + "sbem-6dpf-1-whole-segmented-outside": { + "Color": "White", + "MaxValue": 1, + "MinValue": 0, + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-outside.xml" + } + }, + "sbem-6dpf-1-whole-segmented-resin": { + "Color": "White", + "MaxValue": 1, + "MinValue": 0, + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-resin.xml" + } + }, + "sbem-6dpf-1-whole-segmented-tissue": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-tissue.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-tissue" + } +} \ No newline at end of file diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ache.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ache.xml new file mode 100644 index 0000000..5d18659 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ache.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ache.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-allcr1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-allcr1.xml new file mode 100644 index 0000000..1223b80 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-allcr1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-allcr1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-allcr2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-allcr2.xml new file mode 100644 index 0000000..b4c10d4 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-allcr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-allcr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-anpra.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-anpra.xml new file mode 100644 index 0000000..8c10d30 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-anpra.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-anpra.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-anprb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-anprb.xml new file mode 100644 index 0000000..f3d3c94 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-anprb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-anprb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-ANPRB-MED.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ap2.xml similarity index 91% rename from data/0.5.5/images/prospr-6dpf-1-whole-ANPRB-MED.xml rename to data/0.5.5/images/local/prospr-6dpf-1-whole-ap2.xml index c300b50..40bd5cb 100644 --- a/data/0.5.5/images/prospr-6dpf-1-whole-ANPRB-MED.xml +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ap2.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ANPRB-MED.h5</hdf5> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ap2.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-AP2-MED.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-arx.xml similarity index 91% rename from data/0.5.5/images/prospr-6dpf-1-whole-AP2-MED.xml rename to data/0.5.5/images/local/prospr-6dpf-1-whole-arx.xml index 28a6e91..76a0b84 100644 --- a/data/0.5.5/images/prospr-6dpf-1-whole-AP2-MED.xml +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-arx.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-AP2-MED.h5</hdf5> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-arx.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ascb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ascb.xml new file mode 100644 index 0000000..222e4ee --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ascb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ascb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-asci.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-asci.xml new file mode 100644 index 0000000..8a900b9 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-asci.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-asci.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ascii.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ascii.xml new file mode 100644 index 0000000..26a8110 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ascii.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ascii.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ash.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ash.xml new file mode 100644 index 0000000..054383c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ash.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ash.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-asicalpha.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-asicalpha.xml new file mode 100644 index 0000000..5ea58cc --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-asicalpha.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-asicalpha.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ato2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ato2.xml new file mode 100644 index 0000000..4d0c4cd --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ato2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ato2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-baiap.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-baiap.xml new file mode 100644 index 0000000..fb04c9c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-baiap.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-baiap.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-barh1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-barh1.xml new file mode 100644 index 0000000..488c599 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-barh1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-barh1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-bca1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-bca1.xml new file mode 100644 index 0000000..d048a2b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-bca1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-bca1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-beta3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-beta3.xml new file mode 100644 index 0000000..8f9d90c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-beta3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-beta3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-bmpr1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-bmpr1.xml new file mode 100644 index 0000000..8478412 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-bmpr1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-bmpr1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-boule-like.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-boule-like.xml new file mode 100644 index 0000000..6d6f551 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-boule-like.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-boule-like.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-brn124.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-brn124.xml new file mode 100644 index 0000000..237bf28 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-brn124.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-brn124.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-brn3a.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-brn3a.xml new file mode 100644 index 0000000..56f34cc --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-brn3a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-brn3a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-bsx.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-bsx.xml new file mode 100644 index 0000000..0ebb447 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-bsx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-bsx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-cal2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-cal2.xml new file mode 100644 index 0000000..182d890 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-cal2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-cal2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-calexcitin2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-calexcitin2.xml new file mode 100644 index 0000000..793ab54 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-calexcitin2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-calexcitin2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-calmodulin.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-calmodulin.xml new file mode 100644 index 0000000..c3e77d4 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-calmodulin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-calmodulin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-catl.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-catl.xml new file mode 100644 index 0000000..23177e6 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-catl.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-catl.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ccvd.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ccvd.xml new file mode 100644 index 0000000..2a0fa2c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ccvd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ccvd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-cepu1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-cepu1.xml new file mode 100644 index 0000000..44ddf4d --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-cepu1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-cepu1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-chat.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-chat.xml new file mode 100644 index 0000000..d5e53cd --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-chat.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-chat.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-chx10.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-chx10.xml new file mode 100644 index 0000000..a60d5de --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-chx10.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-chx10.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-cnga.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-cnga.xml new file mode 100644 index 0000000..8d3c250 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-cnga.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-cnga.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-co1a1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-co1a1.xml new file mode 100644 index 0000000..8cba70c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-co1a1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-co1a1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-coe.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-coe.xml new file mode 100644 index 0000000..2a3669e --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-coe.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-coe.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-dach.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-dach.xml new file mode 100644 index 0000000..64c2745 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-dach.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-dach.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-dbhlike.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-dbhlike.xml new file mode 100644 index 0000000..afafc02 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-dbhlike.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-dbhlike.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-dbx1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-dbx1.xml new file mode 100644 index 0000000..6d5c762 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-dbx1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-dbx1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-delta.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-delta.xml new file mode 100644 index 0000000..bff0fb3 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-delta.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-delta.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-dlx.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-dlx.xml new file mode 100644 index 0000000..c3cfe56 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-dlx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-dlx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-dopard2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-dopard2.xml new file mode 100644 index 0000000..222428a --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-dopard2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-dopard2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml new file mode 100644 index 0000000..a093c7f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-edu42to48.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu42to48.xml new file mode 100644 index 0000000..3346a65 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu42to48.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-edu42to48.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml new file mode 100644 index 0000000..fae64ea --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml new file mode 100644 index 0000000..7cb17ba --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-elav.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-elav.xml new file mode 100644 index 0000000..ee33318 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-elav.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-elav.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-eve.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-eve.xml new file mode 100644 index 0000000..636bb23 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-eve.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-eve.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-eya.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-eya.xml new file mode 100644 index 0000000..2966929 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-eya.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-eya.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-fezf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-fezf.xml new file mode 100644 index 0000000..12f5fb5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-fezf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-fezf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-for.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-for.xml new file mode 100644 index 0000000..3516430 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-for.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-for.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-foxd3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-foxd3.xml new file mode 100644 index 0000000..e136dd5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-foxd3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-foxd3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-foxn4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-foxn4.xml new file mode 100644 index 0000000..4e43952 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-foxn4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-foxn4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-fvri.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-fvri.xml new file mode 100644 index 0000000..5117b17 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-fvri.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-fvri.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-fxl21.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-fxl21.xml new file mode 100644 index 0000000..5f91eca --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-fxl21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-fxl21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gad.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gad.xml new file mode 100644 index 0000000..f14fece --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gad.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gad.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gata123.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gata123.xml new file mode 100644 index 0000000..34a8f78 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gata123.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gata123.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gcb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gcb.xml new file mode 100644 index 0000000..50693ed --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gcb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gcb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gcd.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gcd.xml new file mode 100644 index 0000000..2a4f164 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gcd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gcd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gdpd1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gdpd1.xml new file mode 100644 index 0000000..fa05a6f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gdpd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gdpd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-globin-like.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-globin-like.xml new file mode 100644 index 0000000..33c97c1 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-globin-like.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-globin-like.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-glt1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-glt1.xml new file mode 100644 index 0000000..d68dad0 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-glt1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-glt1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-glyt.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-glyt.xml new file mode 100644 index 0000000..d8eca5b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-glyt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-glyt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gnrh.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gnrh.xml new file mode 100644 index 0000000..715c949 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gnrh.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gnrh.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gnrhr.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gnrhr.xml new file mode 100644 index 0000000..7334fa4 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gnrhr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gnrhr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gpb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpb.xml new file mode 100644 index 0000000..21b1dee --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gpb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr2.xml new file mode 100644 index 0000000..69fa1db --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gpcr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr203.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr203.xml new file mode 100644 index 0000000..19d090d --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr203.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gpcr203.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr209.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr209.xml new file mode 100644 index 0000000..fd5efe9 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr209.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gpcr209.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr210.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr210.xml new file mode 100644 index 0000000..f19b714 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr210.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gpcr210.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr32.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr32.xml new file mode 100644 index 0000000..eef3b42 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gpcr32.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gpcr32.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gppcr21.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gppcr21.xml new file mode 100644 index 0000000..2113056 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gppcr21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gppcr21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-grik3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-grik3.xml new file mode 100644 index 0000000..13b9411 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-grik3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-grik3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-grm7.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-grm7.xml new file mode 100644 index 0000000..9c38136 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-grm7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-grm7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gsx.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gsx.xml new file mode 100644 index 0000000..7a2702c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gsx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gsx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-gucy.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-gucy.xml new file mode 100644 index 0000000..67705ea --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-gucy.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-gucy.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hand.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hand.xml new file mode 100644 index 0000000..79341a9 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hand.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hand.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hb9.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hb9.xml new file mode 100644 index 0000000..6dcc573 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hb9.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hb9.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hcn1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hcn1.xml new file mode 100644 index 0000000..59b8932 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hcn1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hcn1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hnf6.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hnf6.xml new file mode 100644 index 0000000..4fddd6f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hnf6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hnf6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hox1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hox1.xml new file mode 100644 index 0000000..23ed8b1 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hox1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hox1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hox4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hox4.xml new file mode 100644 index 0000000..a89990a --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hox4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hox4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hox7.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hox7.xml new file mode 100644 index 0000000..7be1cd5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hox7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hox7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-hr38.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-hr38.xml new file mode 100644 index 0000000..f3faa7e --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-hr38.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-hr38.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-irx2546.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-irx2546.xml new file mode 100644 index 0000000..449504a --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-irx2546.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-irx2546.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-irx6.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-irx6.xml new file mode 100644 index 0000000..ba2dff5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-irx6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-irx6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-isl.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-isl.xml new file mode 100644 index 0000000..2daf437 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-isl.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-isl.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-jkip3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-jkip3.xml new file mode 100644 index 0000000..46bf0dd --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-jkip3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-jkip3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-junctophilin1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-junctophilin1.xml new file mode 100644 index 0000000..8ff987b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-junctophilin1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-junctophilin1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-kanl3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-kanl3.xml new file mode 100644 index 0000000..3e6cbc6 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-kanl3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-kanl3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-kv33b.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-kv33b.xml new file mode 100644 index 0000000..a213bc4 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-kv33b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-kv33b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-kv33e.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-kv33e.xml new file mode 100644 index 0000000..1cfa1a3 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-kv33e.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-kv33e.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lbx1b.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lbx1b.xml new file mode 100644 index 0000000..5bc5472 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lbx1b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lbx1b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-leucin-rich.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-leucin-rich.xml new file mode 100644 index 0000000..49b507f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-leucin-rich.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-leucin-rich.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx15.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx15.xml new file mode 100644 index 0000000..c6d5ac6 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx15.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lhx15.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx2.xml new file mode 100644 index 0000000..b13f461 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lhx2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx3.xml new file mode 100644 index 0000000..d47e677 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lhx3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx6.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx6.xml new file mode 100644 index 0000000..5303265 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lhx6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lhx6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lmo4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lmo4.xml new file mode 100644 index 0000000..6ec1565 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lmo4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lmo4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-lmx1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-lmx1.xml new file mode 100644 index 0000000..41ec6b1 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-lmx1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-lmx1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-loc28250.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc28250.xml new file mode 100644 index 0000000..12dd2d6 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc28250.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-loc28250.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-loc5285ct.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc5285ct.xml new file mode 100644 index 0000000..0600074 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc5285ct.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-loc5285ct.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-loc77859.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc77859.xml new file mode 100644 index 0000000..0452b36 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc77859.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-loc77859.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-loc8913nt.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc8913nt.xml new file mode 100644 index 0000000..86d93a0 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-loc8913nt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-loc8913nt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-maf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-maf.xml new file mode 100644 index 0000000..a5444a5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-maf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-maf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-mecom.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-mecom.xml new file mode 100644 index 0000000..220d734 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-mecom.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-mecom.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-mhcl4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-mhcl4.xml new file mode 100644 index 0000000..980ea38 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-mhcl4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-mhcl4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-mitf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-mitf.xml new file mode 100644 index 0000000..46fb0c1 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-mitf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-mitf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-mrlc2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-mrlc2.xml new file mode 100644 index 0000000..4b2d0a6 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-mrlc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-mrlc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-msx.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-msx.xml new file mode 100644 index 0000000..c2e8037 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-msx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-msx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-mthfsd.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-mthfsd.xml new file mode 100644 index 0000000..c9c11f8 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-mthfsd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-mthfsd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-munc22.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-munc22.xml new file mode 100644 index 0000000..e5267a8 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-munc22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-munc22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-muncb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-muncb.xml new file mode 100644 index 0000000..1fec3b8 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-muncb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-muncb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nachr.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nachr.xml new file mode 100644 index 0000000..048c2a5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nachr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nachr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nb5r3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nb5r3.xml new file mode 100644 index 0000000..6c136ba --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nb5r3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nb5r3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ndus1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ndus1.xml new file mode 100644 index 0000000..a322b97 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ndus1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ndus1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-neog.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-neog.xml new file mode 100644 index 0000000..453d18d --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-neog.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-neog.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-netrin.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-netrin.xml new file mode 100644 index 0000000..597573f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-netrin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-netrin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-neurod.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-neurod.xml new file mode 100644 index 0000000..7a5c970 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-neurod.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-neurod.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ngb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ngb.xml new file mode 100644 index 0000000..6501948 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ngb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ngb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ngn.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ngn.xml new file mode 100644 index 0000000..c718f92 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ngn.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ngn.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nk21.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nk21.xml new file mode 100644 index 0000000..6174f0c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nk21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nk21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nk22.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nk22.xml new file mode 100644 index 0000000..7b28322 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nk22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nk22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nk6.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nk6.xml new file mode 100644 index 0000000..0101ac0 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nk6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nk6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nmdar.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nmdar.xml new file mode 100644 index 0000000..89d19b3 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nmdar.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nmdar.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-noe1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-noe1.xml new file mode 100644 index 0000000..381b79f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-noe1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-noe1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nompc3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nompc3.xml new file mode 100644 index 0000000..b144273 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nompc3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nompc3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml new file mode 100644 index 0000000..6d45d20 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-non-muscle-mhc.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nov2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nov2.xml new file mode 100644 index 0000000..9a07de3 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nov2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nov2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nov29.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nov29.xml new file mode 100644 index 0000000..a37b910 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nov29.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nov29.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-npr1a.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-npr1a.xml new file mode 100644 index 0000000..71d3551 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-npr1a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-npr1a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ntrps.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ntrps.xml new file mode 100644 index 0000000..40cba59 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ntrps.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ntrps.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-nucleolin.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-nucleolin.xml new file mode 100644 index 0000000..4436802 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-nucleolin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-nucleolin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-odo2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-odo2.xml new file mode 100644 index 0000000..616d833 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-odo2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-odo2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-olig.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-olig.xml new file mode 100644 index 0000000..85e0ee1 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-olig.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-olig.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-olm2a.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-olm2a.xml new file mode 100644 index 0000000..45018f7 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-olm2a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-olm2a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-otp.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-otp.xml new file mode 100644 index 0000000..9acdbb5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-otp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-otp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-p56.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-p56.xml new file mode 100644 index 0000000..31ebd70 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-p56.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-p56.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-paraxis.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-paraxis.xml new file mode 100644 index 0000000..e331242 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-paraxis.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-paraxis.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-patched.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-patched.xml new file mode 100644 index 0000000..84f8c00 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-patched.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-patched.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pax258.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pax258.xml new file mode 100644 index 0000000..47f5573 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pax258.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pax258.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pax6.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pax6.xml new file mode 100644 index 0000000..9f6dbfe --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pax6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pax6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pcdh15.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pcdh15.xml new file mode 100644 index 0000000..cce06ec --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pcdh15.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pcdh15.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pde9.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pde9.xml new file mode 100644 index 0000000..106a7ee --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pde9.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pde9.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pdf.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pdf.xml new file mode 100644 index 0000000..98547fd --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pdf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pdf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pea3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pea3.xml new file mode 100644 index 0000000..5d9f4a0 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pea3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pea3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pgam.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pgam.xml new file mode 100644 index 0000000..14d6d10 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pgam.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pgam.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-phc2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-phc2.xml new file mode 100644 index 0000000..88cef47 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-phc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-phc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-phox2b.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-phox2b.xml new file mode 100644 index 0000000..cc97205 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-phox2b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-phox2b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pikachu.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pikachu.xml new file mode 100644 index 0000000..c6192f5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pikachu.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pikachu.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pitxb.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pitxb.xml new file mode 100644 index 0000000..3caf399 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pitxb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pitxb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pkd1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pkd1.xml new file mode 100644 index 0000000..4ecea44 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pkd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pkd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-pkd2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-pkd2.xml new file mode 100644 index 0000000..bbcf3ce --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-pkd2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-pkd2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-plcg.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-plcg.xml new file mode 100644 index 0000000..5b706d2 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-plcg.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-plcg.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ppib.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ppib.xml new file mode 100644 index 0000000..4d2b7ea --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ppib.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ppib.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-prdm8.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-prdm8.xml new file mode 100644 index 0000000..3f396bb --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-prdm8.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-prdm8.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-prox.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-prox.xml new file mode 100644 index 0000000..68b1864 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-prox.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-prox.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-psmf1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-psmf1.xml new file mode 100644 index 0000000..f9d4b4f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-psmf1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-psmf1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ptf1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ptf1.xml new file mode 100644 index 0000000..2e07101 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ptf1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ptf1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-rab3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-rab3.xml new file mode 100644 index 0000000..96df868 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-rab3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-rab3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-rims.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-rims.xml new file mode 100644 index 0000000..2c63440 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-rims.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-rims.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-robo.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-robo.xml new file mode 100644 index 0000000..36bca9b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-robo.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-robo.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-rpc2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-rpc2.xml new file mode 100644 index 0000000..77ce783 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-rpc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-rpc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-AChE-MED.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-rx.xml similarity index 91% rename from data/0.5.5/images/prospr-6dpf-1-whole-AChE-MED.xml rename to data/0.5.5/images/local/prospr-6dpf-1-whole-rx.xml index 92f6497..68cafe3 100644 --- a/data/0.5.5/images/prospr-6dpf-1-whole-AChE-MED.xml +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-rx.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-AChE-MED.h5</hdf5> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-rx.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-ryr2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-ryr2.xml new file mode 100644 index 0000000..1960428 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-ryr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-ryr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-scn8aa.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-scn8aa.xml new file mode 100644 index 0000000..67f8bdb --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-scn8aa.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-scn8aa.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-allglands.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-allglands.xml new file mode 100644 index 0000000..1605c6e --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-allglands.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-allglands.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml new file mode 100644 index 0000000..4f6735c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-foregut.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-foregut.xml new file mode 100644 index 0000000..e005414 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-foregut.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-foregut.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-glands.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-glands.xml new file mode 100644 index 0000000..f62603b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-glands.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-glands.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-head.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-head.xml new file mode 100644 index 0000000..3395913 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-head.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-head.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml new file mode 100644 index 0000000..00a9b03 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.xml new file mode 100644 index 0000000..19fb3b3 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-prospr6-ref.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml new file mode 100644 index 0000000..255d5aa --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-pygidium.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml new file mode 100644 index 0000000..25c0325 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-restofanimal.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-vnc.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-vnc.xml new file mode 100644 index 0000000..3a2fe9b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-segmented-vnc.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-segmented-vnc.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-sema2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-sema2.xml new file mode 100644 index 0000000..7350c62 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-sema2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-sema2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-sert.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-sert.xml new file mode 100644 index 0000000..3629443 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-sert.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-sert.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-sim1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-sim1.xml new file mode 100644 index 0000000..bc6bce5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-sim1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-sim1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-six12.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-six12.xml new file mode 100644 index 0000000..629f92a --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-six12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-six12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-six4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-six4.xml new file mode 100644 index 0000000..03f6677 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-six4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-six4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-slit.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-slit.xml new file mode 100644 index 0000000..fd68925 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-slit.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-slit.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-snd1.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-snd1.xml new file mode 100644 index 0000000..e6d50d5 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-snd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-snd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-sox2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-sox2.xml new file mode 100644 index 0000000..c3fd4dd --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-sox2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-sox2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-sox4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-sox4.xml new file mode 100644 index 0000000..ecbf9ec --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-sox4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-sox4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-soxb12.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-soxb12.xml new file mode 100644 index 0000000..313fcf6 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-soxb12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-soxb12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-soxb2.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-soxb2.xml new file mode 100644 index 0000000..1a3eea4 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-soxb2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-soxb2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-sp8.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-sp8.xml new file mode 100644 index 0000000..22f4799 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-sp8.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-sp8.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-stathmin.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-stathmin.xml new file mode 100644 index 0000000..1028e09 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-stathmin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-stathmin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-synaptopodin.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-synaptopodin.xml new file mode 100644 index 0000000..f9d878b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-synaptopodin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-synaptopodin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-syt.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-syt.xml new file mode 100644 index 0000000..76ea43b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-syt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-syt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-syt12.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-syt12.xml new file mode 100644 index 0000000..6bb5b5e --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-syt12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-syt12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-syt7.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-syt7.xml new file mode 100644 index 0000000..1fe1b11 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-syt7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-syt7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-syta.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-syta.xml new file mode 100644 index 0000000..34687bf --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-syta.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-syta.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-tal.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-tal.xml new file mode 100644 index 0000000..b7db1ef --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-tal.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-tal.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-tbh.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-tbh.xml new file mode 100644 index 0000000..995a259 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-tbh.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-tbh.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-tbx20.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-tbx20.xml new file mode 100644 index 0000000..bd7629e --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-tbx20.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-tbx20.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-ANPRA-MED.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-th.xml similarity index 91% rename from data/0.5.5/images/prospr-6dpf-1-whole-ANPRA-MED.xml rename to data/0.5.5/images/local/prospr-6dpf-1-whole-th.xml index b969d2e..e754990 100644 --- a/data/0.5.5/images/prospr-6dpf-1-whole-ANPRA-MED.xml +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-th.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ANPRA-MED.h5</hdf5> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-th.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-timp.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-timp.xml new file mode 100644 index 0000000..d275ddf --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-timp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-timp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-tlx.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-tlx.xml new file mode 100644 index 0000000..9fc6c9c --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-tlx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-tlx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-tmtc3.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-tmtc3.xml new file mode 100644 index 0000000..a5d99af --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-tmtc3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-tmtc3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-trk.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-trk.xml new file mode 100644 index 0000000..d3cc001 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-trk.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-trk.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-trph.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-trph.xml new file mode 100644 index 0000000..40effe2 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-trph.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-trph.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv.xml new file mode 100644 index 0000000..517df0a --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-trpv.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv4.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv4.xml new file mode 100644 index 0000000..04222f7 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-trpv4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv5.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv5.xml new file mode 100644 index 0000000..b0bc769 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-trpv5.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-trpv5.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-twist.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-twist.xml new file mode 100644 index 0000000..250c1da --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-twist.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-twist.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-unc22.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-unc22.xml new file mode 100644 index 0000000..ab7a23b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-unc22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-unc22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-uncs.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-uncs.xml new file mode 100644 index 0000000..9a1ca10 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-uncs.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-uncs.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-uncx.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-uncx.xml new file mode 100644 index 0000000..4557ebf --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-uncx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-uncx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-upp.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-upp.xml new file mode 100644 index 0000000..6bab27b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-upp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-upp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-usp9x.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-usp9x.xml new file mode 100644 index 0000000..7295ee4 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-usp9x.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-usp9x.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-vacht.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-vacht.xml new file mode 100644 index 0000000..cb9637f --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-vacht.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-vacht.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-vat1l.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-vat1l.xml new file mode 100644 index 0000000..91bbdcc --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-vat1l.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-vat1l.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-vegfr.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-vegfr.xml new file mode 100644 index 0000000..ef9e95b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-vegfr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-vegfr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-vglut.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-vglut.xml new file mode 100644 index 0000000..d27ba68 --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-vglut.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-vglut.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-wnt16.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-wnt16.xml new file mode 100644 index 0000000..fe09b4b --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-wnt16.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-wnt16.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/local/prospr-6dpf-1-whole-wnt5.xml b/data/0.5.5/images/local/prospr-6dpf-1-whole-wnt5.xml new file mode 100644 index 0000000..d53ac5d --- /dev/null +++ b/data/0.5.5/images/local/prospr-6dpf-1-whole-wnt5.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.5.4/images/local/prospr-6dpf-1-whole-wnt5.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>0</id> + <name>0</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>Setup0</name> + <size>500 471 519</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.55 0.55 0.55</size> + </voxelSize> + <attributes> + <channel>0</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.5.5/images/sbem-6dpf-1-whole-raw.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-raw.xml similarity index 92% rename from data/0.5.5/images/sbem-6dpf-1-whole-raw.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-raw.xml index fcf8dfd..5bcba36 100644 --- a/data/0.5.5/images/sbem-6dpf-1-whole-raw.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-raw.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-cells.xml similarity index 92% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-cells.xml index 5a00028..9605c3a 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-cells.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">sbem-6dpf-1-whole-segmented-cells-labels.h5</hdf5> + <hdf5 type="relative">sbem-6dpf-1-whole-segmented-cells.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-chromatin.xml similarity index 91% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-chromatin.xml index 25dd2b4..e1e82b0 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-chromatin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-chromatin-labels.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-chromatin.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-cilia.xml similarity index 90% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-cilia.xml index 075cda5..53ab5a9 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-cilia.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.3/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.h5</hdf5> + <hdf5 type="relative">../../../0.5.3/images/local/sbem-6dpf-1-whole-segmented-cilia.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/sbem-6dpf-1-whole-mask-inside.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-inside.xml similarity index 91% rename from data/0.5.5/images/sbem-6dpf-1-whole-mask-inside.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-inside.xml index 9c923a7..2da1264 100644 --- a/data/0.5.5/images/sbem-6dpf-1-whole-mask-inside.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-inside.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-inside.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-inside.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-muscle.xml similarity index 91% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-muscle.xml index 26ba713..e70beed 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-muscle.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-neuropil.xml similarity index 91% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-neuropil.xml index 2b06347..ed6d3cf 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-neuropil.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-ariande-neuropil.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-neuropil.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml similarity index 90% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml index f818c38..1f61d26 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.h5</hdf5> + <hdf5 type="relative">../../../0.0.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/sbem-6dpf-1-whole-mask-outside.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-outside.xml similarity index 91% rename from data/0.5.5/images/sbem-6dpf-1-whole-mask-outside.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-outside.xml index 5f3be7f..c0a4209 100644 --- a/data/0.5.5/images/sbem-6dpf-1-whole-mask-outside.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-outside.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-outside.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-outside.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/sbem-6dpf-1-whole-mask-resin.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-resin.xml similarity index 91% rename from data/0.5.5/images/sbem-6dpf-1-whole-mask-resin.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-resin.xml index f71df8d..098e39d 100644 --- a/data/0.5.5/images/sbem-6dpf-1-whole-mask-resin.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-resin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-mask-resin.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-resin.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-tissue.xml similarity index 91% rename from data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml rename to data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-tissue.xml index 390dbdb..767f2a6 100644 --- a/data/0.5.5/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml +++ b/data/0.5.5/images/local/sbem-6dpf-1-whole-segmented-tissue.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-tissue-labels.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-tissue.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-ASCb-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-ASCb-MED.xml deleted file mode 100644 index d14d3dc..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-ASCb-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ASCb-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-AllCR1-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-AllCR1-MED.xml deleted file mode 100644 index 9dc2d95..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-AllCR1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-AllCR1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-AllCR2-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-AllCR2-MED.xml deleted file mode 100644 index de9ea6b..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-AllCR2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-AllCR2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-Arx-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-Arx-MED.xml deleted file mode 100644 index 1d2c2ff..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Arx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Arx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-Ash-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-Ash-MED.xml deleted file mode 100644 index 924a01e..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Ash-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Ash-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-BAIAP-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-BAIAP-MED.xml deleted file mode 100644 index fe8b81d..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-BAIAP-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-BAIAP-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-BarH1-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-BarH1-MED.xml deleted file mode 100644 index 7738f03..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-BarH1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - 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a/data/0.5.5/images/prospr-6dpf-1-whole-Beta3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Beta3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-Bmpr1-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-Bmpr1-MED.xml deleted file mode 100644 index 7292297..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Bmpr1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Bmpr1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - 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- <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-COE-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-COE-MED.xml deleted file mode 100644 index 8464382..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-COE-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-COE-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-Cal2-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-Cal2-MED.xml deleted file mode 100644 index 25ee784..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Cal2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Cal2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-Calmodulin-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-Calmodulin-MED.xml deleted file mode 100644 index 91e91a9..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Calmodulin-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Calmodulin-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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a/data/0.5.5/images/prospr-6dpf-1-whole-ENR57-Junctophilin1-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-ENR57-Junctophilin1-MED.xml deleted file mode 100644 index a130a21..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-ENR57-Junctophilin1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ENR57-Junctophilin1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - 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b/data/0.5.5/images/prospr-6dpf-1-whole-NeuroD-MED.xml deleted file mode 100644 index d774b9b..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-NeuroD-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-NeuroD-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 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b/data/0.5.5/images/prospr-6dpf-1-whole-PDF-MED.xml deleted file mode 100644 index e3ff30e..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-PDF-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-PDF-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Pea3-MED.xml deleted file mode 100644 index 6e5953f..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Pea3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Pea3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Prdm8-MED.xml deleted file mode 100644 index abf5498..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Prdm8-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Prdm8-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Robo-MED.xml deleted file mode 100644 index 98365f8..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Robo-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Robo-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Sox2-MED.xml deleted file mode 100644 index 51a2789..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Sox2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Sox2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Syt-MED.xml deleted file mode 100644 index 8c4ca0a..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Syt-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Syt-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-TIMP-MED.xml deleted file mode 100644 index 5c3864c..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-TIMP-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-TIMP-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Tbx20-MED.xml deleted file mode 100644 index 7e5fc65..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Tbx20-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Tbx20-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-VAChT-MED.xml deleted file mode 100644 index ac9fb52..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-VAChT-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-VAChT-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-Wnt5-MED.xml deleted file mode 100644 index a3b13d7..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-Wnt5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-Wnt5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 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b/data/0.5.5/images/prospr-6dpf-1-whole-bsx-MED.xml deleted file mode 100644 index 06013f0..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-bsx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-bsx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 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a/data/0.5.5/images/prospr-6dpf-1-whole-ntrps-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-ntrps-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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fc5205b..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-segmented-RestOfAnimal.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - 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b/data/0.5.5/images/prospr-6dpf-1-whole-six4-MED.xml deleted file mode 100644 index 56e5bdb..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-six4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-six4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-tlx-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-tlx-MED.xml deleted file mode 100644 index eac7a1f..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-tlx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-tlx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-trk-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-trk-MED.xml deleted file mode 100644 index 89b6b44..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-trk-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-trk-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/images/prospr-6dpf-1-whole-uncx-MED.xml b/data/0.5.5/images/prospr-6dpf-1-whole-uncx-MED.xml deleted file mode 100644 index cbc2161..0000000 --- a/data/0.5.5/images/prospr-6dpf-1-whole-uncx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.5.4/images/prospr-6dpf-1-whole-uncx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>0</id> - <name>0</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>Setup0</name> - <size>500 471 519</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.55 0.55 0.55</size> - </voxelSize> - <attributes> - <channel>0</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.55 0.0 0.0 0.0 0.0 0.55 0.0 0.0 0.0 0.0 0.55 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.5.5/misc/bdv_server.txt b/data/0.5.5/misc/bdv_server.txt deleted file mode 100644 index 33dba14..0000000 --- a/data/0.5.5/misc/bdv_server.txt +++ /dev/null @@ -1,227 +0,0 @@ -sbem-6dpf-1-whole-raw ../images/sbem-6dpf-1-whole-raw.xml -sbem-6dpf-1-whole-mask-resin ../images/sbem-6dpf-1-whole-mask-resin.xml -sbem-6dpf-1-whole-mask-inside ../images/sbem-6dpf-1-whole-mask-inside.xml -sbem-6dpf-1-whole-mask-outside ../images/sbem-6dpf-1-whole-mask-outside.xml -prospr-6dpf-1-whole-ENR69-BCA1-MED ../images/prospr-6dpf-1-whole-ENR69-BCA1-MED.xml -prospr-6dpf-1-whole-AllCR2-MED ../images/prospr-6dpf-1-whole-AllCR2-MED.xml -prospr-6dpf-1-whole-ANPRB-MED ../images/prospr-6dpf-1-whole-ANPRB-MED.xml -prospr-6dpf-1-whole-Calmodulin-MED ../images/prospr-6dpf-1-whole-Calmodulin-MED.xml -prospr-6dpf-1-whole-ENR22-CO1A1-MED ../images/prospr-6dpf-1-whole-ENR22-CO1A1-MED.xml -prospr-6dpf-1-whole-ENR39-RPC2-MED ../images/prospr-6dpf-1-whole-ENR39-RPC2-MED.xml -prospr-6dpf-1-whole-ChAT-MED ../images/prospr-6dpf-1-whole-ChAT-MED.xml -prospr-6dpf-1-whole-Arx-MED ../images/prospr-6dpf-1-whole-Arx-MED.xml -prospr-6dpf-1-whole-Brn124-MED ../images/prospr-6dpf-1-whole-Brn124-MED.xml -prospr-6dpf-1-whole-ANPRA-MED ../images/prospr-6dpf-1-whole-ANPRA-MED.xml 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../images/prospr-6dpf-1-whole-segmented-Stomodeum.xml -prospr-6dpf-1-whole-segmented-VNC ../images/prospr-6dpf-1-whole-segmented-VNC.xml -prospr-6dpf-1-whole-segmented-ProSPr6-Ref ../images/prospr-6dpf-1-whole-segmented-ProSPr6-Ref.xml -sbem-6dpf-1-whole-segmented-chromatin-labels ../segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml -sbem-6dpf-1-whole-segmented-tissue-labels ../segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml -sbem-6dpf-1-whole-segmented-muscle ../segmentations/sbem-6dpf-1-whole-segmented-muscle.xml -sbem-6dpf-1-whole-segmented-cells-labels ../segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml -sbem-6dpf-1-whole-segmented-nuclei-labels ../segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml -sbem-6dpf-1-whole-segmented-cilia-labels ../segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml -sbem-6dpf-1-whole-segmented-ariande-neuropil ../segmentations/sbem-6dpf-1-whole-segmented-ariande-neuropil.xml -sbem-6dpf-1-whole-segmented-cats-neuropil ../segmentations/sbem-6dpf-1-whole-segmented-cats-neuropil.xml diff --git a/data/0.5.5/misc/dynamic_segmentations.json b/data/0.5.5/misc/dynamic_segmentations.json new file mode 100644 index 0000000..bea02b5 --- /dev/null +++ b/data/0.5.5/misc/dynamic_segmentations.json @@ -0,0 +1,29 @@ +{ + "sbem-6dpf-1-whole-segmented-cells": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/proofread_cells" + ], + "Postprocess": { + "BoundaryKey": "volumes/affinities/s1", + "BoundaryPath": "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "LabelSegmentation": false, + "MaxSegmentNumber": 32700 + }, + "TableUpdateFunction": "make_cell_tables" + }, + "sbem-6dpf-1-whole-segmented-cilia": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/proofread_cilia" + ], + "TableUpdateFunction": "make_cilia_tables" + }, + "sbem-6dpf-1-whole-segmented-nuclei": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/nuclei" + ], + "TableUpdateFunction": "make_nuclei_tables" + } +} \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/additional_tables.txt b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/additional_tables.txt similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/additional_tables.txt rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/additional_tables.txt diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/cells_to_nuclei.csv similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/cells_to_nuclei.csv diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/default.csv similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/default.csv diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/genes.csv similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/genes.csv diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/morphology.csv similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/morphology.csv diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/regions.csv similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cells/regions.csv diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv deleted file mode 120000 index 9aa7aef..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv new file mode 120000 index 0000000..f1fd55f --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv deleted file mode 120000 index cda81b2..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-cilia-labels/cell_id_mapping.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv deleted file mode 120000 index ad45d6a..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv deleted file mode 120000 index 7074faf..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-cilia-labels/morphology.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/additional_tables.txt b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/additional_tables.txt similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia-labels/additional_tables.txt rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/additional_tables.txt diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/cell_id_mapping.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/cell_id_mapping.csv new file mode 120000 index 0000000..361d3d4 --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/cell_id_mapping.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-cilia/cell_id_mapping.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv new file mode 120000 index 0000000..c7407b4 --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/morphology.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/morphology.csv new file mode 120000 index 0000000..1261aca --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-cilia/morphology.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-cilia/morphology.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv deleted file mode 120000 index da841c8..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv deleted file mode 120000 index 5becc8d..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/additional_tables.txt b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/additional_tables.txt similarity index 100% rename from data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/additional_tables.txt rename to data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/additional_tables.txt diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv new file mode 120000 index 0000000..a2befc9 --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/morphology.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/morphology.csv new file mode 120000 index 0000000..1253c1b --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-nuclei/morphology.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-nuclei/morphology.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv deleted file mode 120000 index 3945612..0000000 --- a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv \ No newline at end of file diff --git a/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-tissue/default.csv b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-tissue/default.csv new file mode 120000 index 0000000..0e62e1b --- /dev/null +++ b/data/0.5.5/tables/sbem-6dpf-1-whole-segmented-tissue/default.csv @@ -0,0 +1 @@ +../../../0.5.4/tables/sbem-6dpf-1-whole-segmented-tissue/default.csv \ No newline at end of file -- GitLab