From 8bd0a3b259d13333351c9507c54a75fc21048f3b Mon Sep 17 00:00:00 2001 From: Constantin Pape <constantin.pape@iwr.uni-heidelberg.de> Date: Thu, 6 Feb 2020 19:21:55 +0100 Subject: [PATCH] Migrate 0.2.0 --- data/0.2.0/images/images.json | 1701 +++++++++++++++++ .../images/local/prospr-6dpf-1-whole-ache.xml | 39 + .../local/prospr-6dpf-1-whole-allcr1.xml | 39 + .../local/prospr-6dpf-1-whole-allcr2.xml | 39 + .../local/prospr-6dpf-1-whole-anpra.xml | 39 + .../local/prospr-6dpf-1-whole-anprb.xml | 39 + .../prospr-6dpf-1-whole-ap2.xml} | 2 +- .../prospr-6dpf-1-whole-arx.xml} | 2 +- .../images/local/prospr-6dpf-1-whole-ascb.xml | 39 + .../images/local/prospr-6dpf-1-whole-asci.xml | 39 + .../local/prospr-6dpf-1-whole-ascii.xml | 39 + .../images/local/prospr-6dpf-1-whole-ash.xml | 39 + .../local/prospr-6dpf-1-whole-asicalpha.xml | 39 + .../local/prospr-6dpf-1-whole-baiap.xml | 39 + .../local/prospr-6dpf-1-whole-barh1.xml | 39 + .../images/local/prospr-6dpf-1-whole-bca1.xml | 39 + 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mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv create mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv delete mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv delete mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv rename data/0.2.0/tables/{sbem-6dpf-1-whole-segmented-nuclei-labels => sbem-6dpf-1-whole-segmented-nuclei}/additional_tables.txt (100%) create mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv create mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/morphology.csv delete mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-tissue-labels/default.csv create mode 120000 data/0.2.0/tables/sbem-6dpf-1-whole-segmented-tissue/default.csv diff --git a/data/0.2.0/images/images.json b/data/0.2.0/images/images.json new file mode 100644 index 0000000..f97bdbd --- /dev/null +++ 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"local/sbem-6dpf-1-whole-segmented-chromatin.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-chromatin" + }, + "sbem-6dpf-1-whole-segmented-cilia": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-cilia.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-cilia" + }, + "sbem-6dpf-1-whole-segmented-muscle": { + "Color": "White", + "MaxValue": 1, + "MinValue": 0, + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-muscle.xml" + } + }, + "sbem-6dpf-1-whole-segmented-nuclei": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-nuclei.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-nuclei" + }, + "sbem-6dpf-1-whole-segmented-tissue": { + "ColorMap": "Glasbey", + "Storage": { + "local": "local/sbem-6dpf-1-whole-segmented-tissue.xml" + }, + "TableFolder": "tables/sbem-6dpf-1-whole-segmented-tissue" + } +} \ No newline at end of file diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ache.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ache.xml new file mode 100644 index 0000000..f855537 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ache.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ache.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-allcr1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-allcr1.xml new file mode 100644 index 0000000..bfda8d8 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-allcr1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-allcr1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-allcr2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-allcr2.xml new file mode 100644 index 0000000..3422a02 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-allcr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-allcr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-anpra.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-anpra.xml new file mode 100644 index 0000000..5456d0c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-anpra.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-anpra.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-anprb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-anprb.xml new file mode 100644 index 0000000..b572edf --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-anprb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-anprb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-ANPRB-MED.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ap2.xml similarity index 91% rename from data/0.2.0/images/prospr-6dpf-1-whole-ANPRB-MED.xml rename to data/0.2.0/images/local/prospr-6dpf-1-whole-ap2.xml index 2f613fe..d705a4e 100644 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ANPRB-MED.xml +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ap2.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ANPRB-MED.h5</hdf5> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ap2.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-AP2-MED.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-arx.xml similarity index 91% rename from data/0.2.0/images/prospr-6dpf-1-whole-AP2-MED.xml rename to data/0.2.0/images/local/prospr-6dpf-1-whole-arx.xml index 1534c3a..263dd5c 100644 --- a/data/0.2.0/images/prospr-6dpf-1-whole-AP2-MED.xml +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-arx.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-AP2-MED.h5</hdf5> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-arx.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ascb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ascb.xml new file mode 100644 index 0000000..9ef646b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ascb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ascb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-asci.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-asci.xml new file mode 100644 index 0000000..c0ed98f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-asci.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-asci.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ascii.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ascii.xml new file mode 100644 index 0000000..e4c7ca4 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ascii.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ascii.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ash.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ash.xml new file mode 100644 index 0000000..b3129f9 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ash.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ash.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-asicalpha.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-asicalpha.xml new file mode 100644 index 0000000..fa29a38 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-asicalpha.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-asicalpha.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-baiap.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-baiap.xml new file mode 100644 index 0000000..35e6e4b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-baiap.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-baiap.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-barh1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-barh1.xml new file mode 100644 index 0000000..d55df92 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-barh1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-barh1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-bca1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-bca1.xml new file mode 100644 index 0000000..d49679c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-bca1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-bca1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-beta3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-beta3.xml new file mode 100644 index 0000000..bd7cf50 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-beta3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-beta3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-bmpr1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-bmpr1.xml new file mode 100644 index 0000000..401e8d2 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-bmpr1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-bmpr1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-boule-like.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-boule-like.xml new file mode 100644 index 0000000..701d84f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-boule-like.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-boule-like.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-brn3a.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-brn3a.xml new file mode 100644 index 0000000..a867207 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-brn3a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-brn3a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-bsx.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-bsx.xml new file mode 100644 index 0000000..8637955 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-bsx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-bsx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-cal2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-cal2.xml new file mode 100644 index 0000000..a158737 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-cal2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-cal2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-calexcitin2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-calexcitin2.xml new file mode 100644 index 0000000..96db989 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-calexcitin2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-calexcitin2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-calmodulin.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-calmodulin.xml new file mode 100644 index 0000000..42fe02c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-calmodulin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-calmodulin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-catl.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-catl.xml new file mode 100644 index 0000000..33010bc --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-catl.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-catl.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ccvd.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ccvd.xml new file mode 100644 index 0000000..3b4a0a8 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ccvd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ccvd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-cepu1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-cepu1.xml new file mode 100644 index 0000000..ee4f90a --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-cepu1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-cepu1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-chat.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-chat.xml new file mode 100644 index 0000000..137af49 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-chat.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-chat.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-chx10.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-chx10.xml new file mode 100644 index 0000000..6e4798a --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-chx10.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-chx10.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-cnga.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-cnga.xml new file mode 100644 index 0000000..786b0f2 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-cnga.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-cnga.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-co1a1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-co1a1.xml new file mode 100644 index 0000000..c0e0a0f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-co1a1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-co1a1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-coe.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-coe.xml new file mode 100644 index 0000000..d4e0773 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-coe.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-coe.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-dach.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-dach.xml new file mode 100644 index 0000000..88c8096 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-dach.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-dach.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-dbhlike.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-dbhlike.xml new file mode 100644 index 0000000..a42f776 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-dbhlike.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-dbhlike.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-dbx1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-dbx1.xml new file mode 100644 index 0000000..b7e5724 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-dbx1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-dbx1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-delta.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-delta.xml new file mode 100644 index 0000000..9433030 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-delta.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-delta.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-dlx.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-dlx.xml new file mode 100644 index 0000000..9ee45ad --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-dlx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-dlx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-dopard2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-dopard2.xml new file mode 100644 index 0000000..f5953a2 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-dopard2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-dopard2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml new file mode 100644 index 0000000..b7e5d23 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-edu3to4at6dpf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml new file mode 100644 index 0000000..13e128d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-edu4to5at6dpf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml new file mode 100644 index 0000000..3ab5e55 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-edu5to6at6dpf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-elav.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-elav.xml new file mode 100644 index 0000000..bccfbcd --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-elav.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-elav.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-eve.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-eve.xml new file mode 100644 index 0000000..13d0bc9 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-eve.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-eve.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-eya.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-eya.xml new file mode 100644 index 0000000..6327891 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-eya.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-eya.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-fezf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-fezf.xml new file mode 100644 index 0000000..86f5c1f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-fezf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-fezf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-for.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-for.xml new file mode 100644 index 0000000..b10b0f4 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-for.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-for.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-foxd3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-foxd3.xml new file mode 100644 index 0000000..8c1f569 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-foxd3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-foxd3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-foxn4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-foxn4.xml new file mode 100644 index 0000000..c053c6a --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-foxn4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-foxn4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-fvri.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-fvri.xml new file mode 100644 index 0000000..d95094c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-fvri.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-fvri.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-fxl21.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-fxl21.xml new file mode 100644 index 0000000..c91bd9b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-fxl21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-fxl21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gad.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gad.xml new file mode 100644 index 0000000..ea55a07 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gad.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gad.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gata123.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gata123.xml new file mode 100644 index 0000000..f6dab35 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gata123.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gata123.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gcb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gcb.xml new file mode 100644 index 0000000..a2d779f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gcb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gcb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gcd.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gcd.xml new file mode 100644 index 0000000..9885d9f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gcd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gcd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gdpd1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gdpd1.xml new file mode 100644 index 0000000..8e9dfe8 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gdpd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gdpd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-globin-like.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-globin-like.xml new file mode 100644 index 0000000..497db33 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-globin-like.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-globin-like.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-glt1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-glt1.xml new file mode 100644 index 0000000..e92d6d3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-glt1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-glt1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-glyt.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-glyt.xml new file mode 100644 index 0000000..2cee8dd --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-glyt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-glyt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gnrh.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gnrh.xml new file mode 100644 index 0000000..83524d1 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gnrh.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gnrh.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gnrhr.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gnrhr.xml new file mode 100644 index 0000000..286240c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gnrhr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gnrhr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gpb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpb.xml new file mode 100644 index 0000000..f44b0ce --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gpb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr2.xml new file mode 100644 index 0000000..6e13d5d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gpcr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr203.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr203.xml new file mode 100644 index 0000000..99566d3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr203.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gpcr203.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr209.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr209.xml new file mode 100644 index 0000000..f93bf58 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr209.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gpcr209.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr210.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr210.xml new file mode 100644 index 0000000..de3d0fa --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr210.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gpcr210.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr32.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr32.xml new file mode 100644 index 0000000..38aba72 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gpcr32.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gpcr32.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gppcr21.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gppcr21.xml new file mode 100644 index 0000000..18647ab --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gppcr21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gppcr21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-grik3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-grik3.xml new file mode 100644 index 0000000..5d65e5d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-grik3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-grik3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-grm7.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-grm7.xml new file mode 100644 index 0000000..5f8fa18 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-grm7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-grm7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gsx.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gsx.xml new file mode 100644 index 0000000..c705c43 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gsx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gsx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-gucy.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-gucy.xml new file mode 100644 index 0000000..49371ef --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-gucy.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-gucy.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hand.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hand.xml new file mode 100644 index 0000000..ccc50e2 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hand.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hand.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hb9.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hb9.xml new file mode 100644 index 0000000..aacf220 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hb9.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hb9.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hcn1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hcn1.xml new file mode 100644 index 0000000..882b31f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hcn1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hcn1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hnf6.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hnf6.xml new file mode 100644 index 0000000..a68b2a2 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hnf6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hnf6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hox1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hox1.xml new file mode 100644 index 0000000..16d7193 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hox1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hox1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hox4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hox4.xml new file mode 100644 index 0000000..1304d93 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hox4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hox4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hox7.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hox7.xml new file mode 100644 index 0000000..b355fca --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hox7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hox7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-hr38.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-hr38.xml new file mode 100644 index 0000000..e158181 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-hr38.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-hr38.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-irx2546.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-irx2546.xml new file mode 100644 index 0000000..964f1ef --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-irx2546.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-irx2546.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-irx6.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-irx6.xml new file mode 100644 index 0000000..334a973 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-irx6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-irx6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-isl.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-isl.xml new file mode 100644 index 0000000..bf679cb --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-isl.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-isl.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-jkip3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-jkip3.xml new file mode 100644 index 0000000..ad47caf --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-jkip3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-jkip3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-junctophilin1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-junctophilin1.xml new file mode 100644 index 0000000..633966b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-junctophilin1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-junctophilin1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-kanl3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-kanl3.xml new file mode 100644 index 0000000..37d61e5 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-kanl3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-kanl3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-kv33b.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-kv33b.xml new file mode 100644 index 0000000..3655e37 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-kv33b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-kv33b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-kv33e.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-kv33e.xml new file mode 100644 index 0000000..ec4f9b8 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-kv33e.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-kv33e.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lbx1b.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lbx1b.xml new file mode 100644 index 0000000..f71ce21 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lbx1b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lbx1b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-leucin-rich.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-leucin-rich.xml new file mode 100644 index 0000000..fae944d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-leucin-rich.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-leucin-rich.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx15.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx15.xml new file mode 100644 index 0000000..173ff20 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx15.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lhx15.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx2.xml new file mode 100644 index 0000000..3f0b968 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lhx2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx3.xml new file mode 100644 index 0000000..05a4a16 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lhx3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx6.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx6.xml new file mode 100644 index 0000000..883dd04 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lhx6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lhx6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lmo4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lmo4.xml new file mode 100644 index 0000000..62ba499 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lmo4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lmo4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-lmx1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-lmx1.xml new file mode 100644 index 0000000..ee4e1bf --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-lmx1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-lmx1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-loc28250.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc28250.xml new file mode 100644 index 0000000..ab45b94 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc28250.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-loc28250.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-loc5285ct.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc5285ct.xml new file mode 100644 index 0000000..dd16942 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc5285ct.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-loc5285ct.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-loc77859.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc77859.xml new file mode 100644 index 0000000..7cdb865 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc77859.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-loc77859.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-loc8913nt.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc8913nt.xml new file mode 100644 index 0000000..04727ad --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-loc8913nt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-loc8913nt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-maf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-maf.xml new file mode 100644 index 0000000..48b729a --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-maf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-maf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-mecom.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-mecom.xml new file mode 100644 index 0000000..2f51c6d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-mecom.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-mecom.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-mhcl4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-mhcl4.xml new file mode 100644 index 0000000..2a82316 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-mhcl4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-mhcl4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-mitf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-mitf.xml new file mode 100644 index 0000000..e48b76e --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-mitf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-mitf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-mrlc2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-mrlc2.xml new file mode 100644 index 0000000..686ced3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-mrlc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-mrlc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-msx.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-msx.xml new file mode 100644 index 0000000..28067ea --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-msx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-msx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-mthfsd.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-mthfsd.xml new file mode 100644 index 0000000..c671a9d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-mthfsd.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-mthfsd.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-munc22.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-munc22.xml new file mode 100644 index 0000000..79b4c91 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-munc22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-munc22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-muncb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-muncb.xml new file mode 100644 index 0000000..dc26ccc --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-muncb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-muncb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nachr.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nachr.xml new file mode 100644 index 0000000..6e1a43f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nachr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nachr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nb5r3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nb5r3.xml new file mode 100644 index 0000000..fa61435 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nb5r3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nb5r3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ndus1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ndus1.xml new file mode 100644 index 0000000..1c1fd20 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ndus1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ndus1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-neog.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-neog.xml new file mode 100644 index 0000000..c71b973 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-neog.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-neog.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-netrin.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-netrin.xml new file mode 100644 index 0000000..b7ddd80 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-netrin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-netrin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-neurod.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-neurod.xml new file mode 100644 index 0000000..839a94f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-neurod.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-neurod.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ngb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ngb.xml new file mode 100644 index 0000000..94de508 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ngb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ngb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ngn.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ngn.xml new file mode 100644 index 0000000..dc08e0f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ngn.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ngn.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nk21.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nk21.xml new file mode 100644 index 0000000..379e4ee --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nk21.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nk21.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nk22.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nk22.xml new file mode 100644 index 0000000..599b0d0 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nk22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nk22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nk6.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nk6.xml new file mode 100644 index 0000000..96f421f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nk6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nk6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nmdar.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nmdar.xml new file mode 100644 index 0000000..74b9c1d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nmdar.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nmdar.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-noe1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-noe1.xml new file mode 100644 index 0000000..23c6d47 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-noe1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-noe1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml new file mode 100644 index 0000000..99e7db3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-non-muscle-mhc.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nov2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nov2.xml new file mode 100644 index 0000000..87a772e --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nov2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nov2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nov29.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nov29.xml new file mode 100644 index 0000000..e2ef542 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nov29.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nov29.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-npr1a.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-npr1a.xml new file mode 100644 index 0000000..42d648e --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-npr1a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-npr1a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ntrps.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ntrps.xml new file mode 100644 index 0000000..1551d33 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ntrps.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ntrps.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-nucleolin.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-nucleolin.xml new file mode 100644 index 0000000..39ea461 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-nucleolin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-nucleolin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-odo2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-odo2.xml new file mode 100644 index 0000000..31879cf --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-odo2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-odo2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-olig.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-olig.xml new file mode 100644 index 0000000..70e8c50 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-olig.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-olig.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-olm2a.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-olm2a.xml new file mode 100644 index 0000000..6cd694f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-olm2a.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-olm2a.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-otp.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-otp.xml new file mode 100644 index 0000000..04ae430 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-otp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-otp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-p56.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-p56.xml new file mode 100644 index 0000000..e43f081 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-p56.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-p56.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-paraxis.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-paraxis.xml new file mode 100644 index 0000000..2c9802f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-paraxis.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-paraxis.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-patched.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-patched.xml new file mode 100644 index 0000000..90343e4 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-patched.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-patched.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pax258.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pax258.xml new file mode 100644 index 0000000..211d720 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pax258.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pax258.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pax6.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pax6.xml new file mode 100644 index 0000000..6286111 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pax6.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pax6.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pcdh15.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pcdh15.xml new file mode 100644 index 0000000..e9e97ac --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pcdh15.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pcdh15.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pde9.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pde9.xml new file mode 100644 index 0000000..12a4707 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pde9.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pde9.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pdf.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pdf.xml new file mode 100644 index 0000000..920cb54 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pdf.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pdf.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pea3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pea3.xml new file mode 100644 index 0000000..023f5e6 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pea3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pea3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pgam.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pgam.xml new file mode 100644 index 0000000..c535268 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pgam.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pgam.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-phc2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-phc2.xml new file mode 100644 index 0000000..10e7fb5 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-phc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-phc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-phox2b.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-phox2b.xml new file mode 100644 index 0000000..4d951af --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-phox2b.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-phox2b.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pikachu.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pikachu.xml new file mode 100644 index 0000000..dc0ff4c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pikachu.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pikachu.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-pitxb.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-pitxb.xml new file mode 100644 index 0000000..83863a4 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-pitxb.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-pitxb.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-plcg.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-plcg.xml new file mode 100644 index 0000000..d7fd956 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-plcg.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-plcg.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ppib.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ppib.xml new file mode 100644 index 0000000..0acf822 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ppib.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ppib.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-prdm8.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-prdm8.xml new file mode 100644 index 0000000..eedcf5f --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-prdm8.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-prdm8.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-prox.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-prox.xml new file mode 100644 index 0000000..88810a8 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-prox.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-prox.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-psmf1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-psmf1.xml new file mode 100644 index 0000000..8326928 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-psmf1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-psmf1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ptf1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ptf1.xml new file mode 100644 index 0000000..cf4b183 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ptf1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ptf1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-rab3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-rab3.xml new file mode 100644 index 0000000..62fb014 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-rab3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-rab3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-rims.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-rims.xml new file mode 100644 index 0000000..ceba3b3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-rims.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-rims.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-robo.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-robo.xml new file mode 100644 index 0000000..b42b355 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-robo.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-robo.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-rpc2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-rpc2.xml new file mode 100644 index 0000000..bbc564e --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-rpc2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-rpc2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Syt12-MED.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-rx.xml similarity index 93% rename from data/0.2.0/images/prospr-6dpf-1-whole-Syt12-MED.xml rename to data/0.2.0/images/local/prospr-6dpf-1-whole-rx.xml index f82c105..ea35f3a 100644 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Syt12-MED.xml +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-rx.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Syt12-MED.h5</hdf5> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-rx.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-ryr2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-ryr2.xml new file mode 100644 index 0000000..aeed73b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-ryr2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-ryr2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-scn8aa.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-scn8aa.xml new file mode 100644 index 0000000..c3cbbf3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-scn8aa.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-scn8aa.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml new file mode 100644 index 0000000..6f6be9b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-crypticsegment.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-foregut.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-foregut.xml new file mode 100644 index 0000000..e11434d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-foregut.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-foregut.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-head.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-head.xml new file mode 100644 index 0000000..ec390a0 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-head.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-head.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml new file mode 100644 index 0000000..601d56d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-lateralectoderm.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml new file mode 100644 index 0000000..cf5282a --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-pygidium.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml new file mode 100644 index 0000000..d3b70fc --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-restofanimal.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-vnc.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-vnc.xml new file mode 100644 index 0000000..20c4ee5 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-segmented-vnc.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-segmented-vnc.h5</hdf5> + </ImageLoader> + <ViewSetups> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-sema2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-sema2.xml new file mode 100644 index 0000000..056b5f4 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-sema2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-sema2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-sert.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-sert.xml new file mode 100644 index 0000000..7829901 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-sert.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-sert.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-sim1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-sim1.xml new file mode 100644 index 0000000..9d896c0 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-sim1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-sim1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-six12.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-six12.xml new file mode 100644 index 0000000..85c6982 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-six12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-six12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-six4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-six4.xml new file mode 100644 index 0000000..5b396ef --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-six4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-six4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-slit.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-slit.xml new file mode 100644 index 0000000..a7f37f9 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-slit.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-slit.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-snd1.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-snd1.xml new file mode 100644 index 0000000..fa77128 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-snd1.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-snd1.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-sox2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-sox2.xml new file mode 100644 index 0000000..2702c25 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-sox2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-sox2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-sox4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-sox4.xml new file mode 100644 index 0000000..f95dc1e --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-sox4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-sox4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-soxb12.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-soxb12.xml new file mode 100644 index 0000000..737ab32 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-soxb12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-soxb12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-soxb2.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-soxb2.xml new file mode 100644 index 0000000..d270f1c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-soxb2.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-soxb2.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-sp8.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-sp8.xml new file mode 100644 index 0000000..f29d34d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-sp8.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-sp8.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-stathmin.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-stathmin.xml new file mode 100644 index 0000000..5423bf1 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-stathmin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-stathmin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-synaptopodin.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-synaptopodin.xml new file mode 100644 index 0000000..2b27299 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-synaptopodin.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-synaptopodin.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-syt.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-syt.xml new file mode 100644 index 0000000..7f5a665 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-syt.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-syt.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-syt12.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-syt12.xml new file mode 100644 index 0000000..fe34ac5 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-syt12.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-syt12.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-syt7.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-syt7.xml new file mode 100644 index 0000000..6943703 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-syt7.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-syt7.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-syta.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-syta.xml new file mode 100644 index 0000000..33f524b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-syta.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-syta.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-tal.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-tal.xml new file mode 100644 index 0000000..e4e65dd --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-tal.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-tal.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-tbh.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-tbh.xml new file mode 100644 index 0000000..ca338f3 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-tbh.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-tbh.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-tbx20.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-tbx20.xml new file mode 100644 index 0000000..27bac60 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-tbx20.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-tbx20.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-ANPRA-MED.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-th.xml similarity index 91% rename from data/0.2.0/images/prospr-6dpf-1-whole-ANPRA-MED.xml rename to data/0.2.0/images/local/prospr-6dpf-1-whole-th.xml index 797d5a5..ba71cb1 100644 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ANPRA-MED.xml +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-th.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ANPRA-MED.h5</hdf5> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-th.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-timp.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-timp.xml new file mode 100644 index 0000000..e1288ac --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-timp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-timp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-tlx.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-tlx.xml new file mode 100644 index 0000000..a3f2f82 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-tlx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-tlx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-tmtc3.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-tmtc3.xml new file mode 100644 index 0000000..a3560dc --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-tmtc3.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-tmtc3.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-trk.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-trk.xml new file mode 100644 index 0000000..e0173ff --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-trk.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-trk.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-trph.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-trph.xml new file mode 100644 index 0000000..195e89b --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-trph.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-trph.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv.xml new file mode 100644 index 0000000..5e89b09 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-trpv.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv4.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv4.xml new file mode 100644 index 0000000..caaeb23 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv4.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-trpv4.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv5.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv5.xml new file mode 100644 index 0000000..743c97c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-trpv5.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-trpv5.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-twist.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-twist.xml new file mode 100644 index 0000000..13e3b3d --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-twist.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-twist.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-unc22.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-unc22.xml new file mode 100644 index 0000000..8ce39cb --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-unc22.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-unc22.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-uncs.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-uncs.xml new file mode 100644 index 0000000..8b92787 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-uncs.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-uncs.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-uncx.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-uncx.xml new file mode 100644 index 0000000..c89c5b7 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-uncx.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-uncx.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-upp.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-upp.xml new file mode 100644 index 0000000..e50c421 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-upp.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-upp.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-usp9x.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-usp9x.xml new file mode 100644 index 0000000..5fa7a3c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-usp9x.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-usp9x.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-vacht.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-vacht.xml new file mode 100644 index 0000000..5b871ba --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-vacht.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-vacht.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-vat1l.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-vat1l.xml new file mode 100644 index 0000000..2097f82 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-vat1l.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-vat1l.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-vegfr.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-vegfr.xml new file mode 100644 index 0000000..2de5d7c --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-vegfr.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-vegfr.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-vglut.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-vglut.xml new file mode 100644 index 0000000..ff8a392 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-vglut.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-vglut.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-wnt16.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-wnt16.xml new file mode 100644 index 0000000..e0ffc53 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-wnt16.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-wnt16.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/local/prospr-6dpf-1-whole-wnt5.xml b/data/0.2.0/images/local/prospr-6dpf-1-whole-wnt5.xml new file mode 100644 index 0000000..31f93c1 --- /dev/null +++ b/data/0.2.0/images/local/prospr-6dpf-1-whole-wnt5.xml @@ -0,0 +1,39 @@ +<SpimData version="0.2"> + <BasePath type="relative">.</BasePath> + <SequenceDescription> + <ImageLoader format="bdv.hdf5"> + <hdf5 type="relative">../../../0.0.0/images/local/prospr-6dpf-1-whole-wnt5.h5</hdf5> + </ImageLoader> + <ViewSetups> + <ViewSetup> + <id>0</id> + <name>channel 1</name> + <size>550 518 570</size> + <voxelSize> + <unit>micrometer</unit> + <size>0.5 0.5 0.5</size> + </voxelSize> + <attributes> + <channel>1</channel> + </attributes> + </ViewSetup> + <Attributes name="channel"> + <Channel> + <id>1</id> + <name>1</name> + </Channel> + </Attributes> + </ViewSetups> + <Timepoints type="range"> + <first>0</first> + <last>0</last> + </Timepoints> + </SequenceDescription> + <ViewRegistrations> + <ViewRegistration setup="0" timepoint="0"> + <ViewTransform type="affine"> + <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> + </ViewTransform> + </ViewRegistration> + </ViewRegistrations> +</SpimData> diff --git a/data/0.2.0/images/sbem-6dpf-1-whole-raw.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-raw.xml similarity index 92% rename from data/0.2.0/images/sbem-6dpf-1-whole-raw.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-raw.xml index fcf8dfd..5bcba36 100644 --- a/data/0.2.0/images/sbem-6dpf-1-whole-raw.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-raw.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-raw.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-cells.xml similarity index 90% rename from data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-cells.xml index ab9623b..c9cc9e0 100644 --- a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-cells.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.1.1/segmentations/sbem-6dpf-1-whole-segmented-cells-labels.h5</hdf5> + <hdf5 type="relative">../../../0.1.1/images/local/sbem-6dpf-1-whole-segmented-cells.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-chromatin.xml similarity index 91% rename from data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-chromatin.xml index 25dd2b4..e1e82b0 100644 --- a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-chromatin-labels.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-chromatin.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-chromatin-labels.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-chromatin.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-cilia.xml similarity index 90% rename from data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-cilia.xml index 4affd0b..88d46fe 100644 --- a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-cilia.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.1.0/segmentations/sbem-6dpf-1-whole-segmented-cilia-labels.h5</hdf5> + <hdf5 type="relative">../../../0.1.0/images/local/sbem-6dpf-1-whole-segmented-cilia.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-muscle.xml similarity index 91% rename from data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-muscle.xml index 26ba713..e70beed 100644 --- a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-muscle.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-muscle.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-muscle.h5</hdf5> </ImageLoader> <ViewSetups> <ViewSetup> diff --git a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml similarity index 90% rename from data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml index f818c38..1f61d26 100644 --- a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/segmentations/sbem-6dpf-1-whole-segmented-nuclei-labels.h5</hdf5> + <hdf5 type="relative">../../../0.0.0/images/local/sbem-6dpf-1-whole-segmented-nuclei.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-tissue.xml similarity index 91% rename from data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml rename to data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-tissue.xml index 390dbdb..767f2a6 100644 --- a/data/0.2.0/segmentations/sbem-6dpf-1-whole-segmented-tissue-labels.xml +++ b/data/0.2.0/images/local/sbem-6dpf-1-whole-segmented-tissue.xml @@ -2,7 +2,7 @@ <BasePath type="relative">.</BasePath> <SequenceDescription> <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../rawdata/sbem-6dpf-1-whole-segmented-tissue-labels.h5</hdf5> + <hdf5 type="relative">../../../rawdata/sbem-6dpf-1-whole-segmented-tissue.h5</hdf5> </ImageLoader> <ViewSetups> <Attributes name="channel"> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-AChE-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-AChE-MED.xml deleted file mode 100644 index e5c4a42..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-AChE-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-AChE-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-ASCb-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-ASCb-MED.xml deleted file mode 100644 index f92e75c..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ASCb-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ASCb-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-AllCR1-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-AllCR1-MED.xml deleted file mode 100644 index a70874a..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-AllCR1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-AllCR1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-AllCR2-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-AllCR2-MED.xml deleted file mode 100644 index 970513b..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-AllCR2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-AllCR2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-BarH1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-BarH1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-Cal2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Cal2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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mode 100644 index 6f371f5..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-DbhLike-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-DbhLike-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - 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- <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-ENR12-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-ENR12-MED.xml deleted file mode 100644 index 92e2693..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - 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mode 100644 index 8c74552..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR13-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR13-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-ENR16-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-ENR16-MED.xml deleted file mode 100644 index f805085..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR16-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR16-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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95ca3d5..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR22-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR22-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - 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37cb497..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR31-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR31-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - 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mode 100644 index f7c5016..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR46-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR46-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-ENR54-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-ENR54-MED.xml deleted file mode 100644 index 64522e8..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR54-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR54-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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f6b228d..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ENR64-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ENR64-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - 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639c92c..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-ElaV-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-ElaV-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-GPCR209-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-GPCR209-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-Gucy-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Gucy-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-Hox5-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Hox5-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-Kv33e-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Kv33e-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-Lmx1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Lmx1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Loc77859-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Loc77859-MED.xml deleted file mode 100644 index cbdad46..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Loc77859-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Loc77859-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - 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file mode 100644 index 05bc07f..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-MHCL4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-MHCL4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - 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name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Mitf-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Mitf-MED.xml deleted file mode 100644 index 9429013..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Mitf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Mitf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - 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6ca1da7..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-NMDAR-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-NMDAR-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-NOV29-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-NOV29-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-NPR1a-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-NPR1a-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Olig-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Olig-MED.xml deleted file mode 100644 index d0996b3..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Olig-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader 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a/data/0.2.0/images/prospr-6dpf-1-whole-P56-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-P56-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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- <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-PLCg-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-PLCg-MED.xml deleted file mode 100644 index 8c2cbaf..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-PLCg-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-PLCg-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Pax258-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Pax258-MED.xml deleted file mode 100644 index ae95207..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Pax258-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Pax258-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Pax6-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Pax6-MED.xml deleted file mode 100644 index eef6de6..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Pax6-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Pax6-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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- <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Pea3-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Pea3-MED.xml deleted file mode 100644 index 8087336..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Pea3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Pea3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - 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<unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Phox2b-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Phox2b-MED.xml deleted file mode 100644 index 99e02fd..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Phox2b-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Phox2b-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Pikachu-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Pikachu-MED.xml deleted file mode 100644 index bd6c517..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Pikachu-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Pikachu-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-PitxB-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-PitxB-MED.xml deleted file mode 100644 index 007cf14..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-PitxB-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-PitxB-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - 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<Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Prox-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Prox-MED.xml deleted file mode 100644 index 351a591..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Prox-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Prox-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Ptf1-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Ptf1-MED.xml deleted file mode 100644 index b230eaa..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Ptf1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Ptf1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-RIMS-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-RIMS-MED.xml deleted file mode 100644 index 6e62be4..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-RIMS-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-RIMS-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Rab3-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Rab3-MED.xml deleted file mode 100644 index 5dda694..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Rab3-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Rab3-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Robo-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Robo-MED.xml deleted file mode 100644 index e309382..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Robo-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Robo-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Scn8aa-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Scn8aa-MED.xml deleted file mode 100644 index 6c21136..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Scn8aa-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Scn8aa-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Sema2-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Sema2-MED.xml deleted file mode 100644 index 03f6de9..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Sema2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Sema2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Sim1-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Sim1-MED.xml deleted file mode 100644 index 427dae1..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Sim1-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Sim1-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Slit-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Slit-MED.xml deleted file mode 100644 index 25f07c1..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Slit-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Slit-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Sox2-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Sox2-MED.xml deleted file mode 100644 index 3b4baa1..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Sox2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Sox2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Sox4-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Sox4-MED.xml deleted file mode 100644 index b25dc49..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Sox4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Sox4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-SoxB12-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-SoxB12-MED.xml deleted file mode 100644 index c461a5b..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-SoxB12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-SoxB12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-SoxB2-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-SoxB2-MED.xml deleted file mode 100644 index 9e4a564..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-SoxB2-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-SoxB2-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Sp8-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Sp8-MED.xml deleted file mode 100644 index c5a71d5..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Sp8-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Sp8-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - 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<name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Syt7-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Syt7-MED.xml deleted file mode 100644 index 7b5e34d..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Syt7-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Syt7-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-Syta-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-Syta-MED.xml deleted file mode 100644 index 8aa8bea..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-Syta-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Syta-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-TH-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-TH-MED.xml deleted file mode 100644 index cd3b68a..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-TH-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-TH-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> 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a/data/0.2.0/images/prospr-6dpf-1-whole-Tbh-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Tbh-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-UNCS-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-UNCS-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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a/data/0.2.0/images/prospr-6dpf-1-whole-Wnt16-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-Wnt16-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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type="relative">../../0.0.0/images/prospr-6dpf-1-whole-asicalpha-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-bsx-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-bsx-MED.xml deleted file mode 100644 index 8e96b37..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-bsx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-bsx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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<unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-delta-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-delta-MED.xml deleted file mode 100644 index 1f0a96e..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-delta-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 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a/data/0.2.0/images/prospr-6dpf-1-whole-dlx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-dlx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - 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- <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-eve-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-eya-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-eya-MED.xml deleted file mode 100644 index 6d865df..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-eya-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-eya-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-fezf-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-fezf-MED.xml deleted file mode 100644 index a493a5a..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-fezf-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-fezf-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - 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b/data/0.2.0/images/prospr-6dpf-1-whole-irx-MED.xml deleted file mode 100644 index 54254c4..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-irx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-irx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 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b/data/0.2.0/images/prospr-6dpf-1-whole-msx-MED.xml deleted file mode 100644 index dcae962..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-msx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-msx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 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b/data/0.2.0/images/prospr-6dpf-1-whole-nk21-MED.xml deleted file mode 100644 index 5351c1b..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-nk21-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-nk21-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 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type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-otp-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-paraxis-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-paraxis-MED.xml deleted file mode 100644 index 57b0258..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-paraxis-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-paraxis-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - 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- <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml b/data/0.2.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml deleted file mode 100644 index 358e5e4..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-segmented-CrypticSegment.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - 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type="relative">../../0.0.0/images/prospr-6dpf-1-whole-segmented-Head.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-PNS.xml b/data/0.2.0/images/prospr-6dpf-1-whole-segmented-PNS.xml deleted file mode 100644 index ec0798f..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-PNS.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-segmented-PNS.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-Pygidium.xml b/data/0.2.0/images/prospr-6dpf-1-whole-segmented-Pygidium.xml deleted file mode 100644 index af74414..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-Pygidium.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-segmented-Pygidium.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - 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<voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml b/data/0.2.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml deleted file mode 100644 index 9bc8ae3..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-segmented-Stomodeum.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-VNC.xml b/data/0.2.0/images/prospr-6dpf-1-whole-segmented-VNC.xml deleted file mode 100644 index 58a70f6..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-segmented-VNC.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-segmented-VNC.h5</hdf5> - </ImageLoader> - <ViewSetups> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-sert-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-sert-MED.xml deleted file mode 100644 index 4abc705..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-sert-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-sert-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-six12-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-six12-MED.xml deleted file mode 100644 index 422f0b4..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-six12-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-six12-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-six4-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-six4-MED.xml deleted file mode 100644 index cdc2d33..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-six4-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-six4-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-tlx-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-tlx-MED.xml deleted file mode 100644 index 866fd4a..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-tlx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-tlx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-trk-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-trk-MED.xml deleted file mode 100644 index 6d8218c..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-trk-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-trk-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/images/prospr-6dpf-1-whole-uncx-MED.xml b/data/0.2.0/images/prospr-6dpf-1-whole-uncx-MED.xml deleted file mode 100644 index a8a2444..0000000 --- a/data/0.2.0/images/prospr-6dpf-1-whole-uncx-MED.xml +++ /dev/null @@ -1,39 +0,0 @@ -<SpimData version="0.2"> - <BasePath type="relative">.</BasePath> - <SequenceDescription> - <ImageLoader format="bdv.hdf5"> - <hdf5 type="relative">../../0.0.0/images/prospr-6dpf-1-whole-uncx-MED.h5</hdf5> - </ImageLoader> - <ViewSetups> - <ViewSetup> - <id>0</id> - <name>channel 1</name> - <size>550 518 570</size> - <voxelSize> - <unit>micrometer</unit> - <size>0.5 0.5 0.5</size> - </voxelSize> - <attributes> - <channel>1</channel> - </attributes> - </ViewSetup> - <Attributes name="channel"> - <Channel> - <id>1</id> - <name>1</name> - </Channel> - </Attributes> - </ViewSetups> - <Timepoints type="range"> - <first>0</first> - <last>0</last> - </Timepoints> - </SequenceDescription> - <ViewRegistrations> - <ViewRegistration setup="0" timepoint="0"> - <ViewTransform type="affine"> - <affine>0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.0 0.5 0.0</affine> - </ViewTransform> - </ViewRegistration> - </ViewRegistrations> -</SpimData> diff --git a/data/0.2.0/misc/bdv_server.txt b/data/0.2.0/misc/bdv_server.txt deleted file mode 100644 index acc8bfb..0000000 --- a/data/0.2.0/misc/bdv_server.txt +++ /dev/null @@ -1,215 +0,0 @@ -sbem-6dpf-1-whole-raw ../images/sbem-6dpf-1-whole-raw.xml -prospr-6dpf-1-whole-AChE-MED ../images/prospr-6dpf-1-whole-AChE-MED.xml -prospr-6dpf-1-whole-ANPRA-MED ../images/prospr-6dpf-1-whole-ANPRA-MED.xml -prospr-6dpf-1-whole-ANPRB-MED ../images/prospr-6dpf-1-whole-ANPRB-MED.xml -prospr-6dpf-1-whole-AP2-MED ../images/prospr-6dpf-1-whole-AP2-MED.xml -prospr-6dpf-1-whole-ASCb-MED ../images/prospr-6dpf-1-whole-ASCb-MED.xml -prospr-6dpf-1-whole-AcTub-MED ../images/prospr-6dpf-1-whole-AcTub-MED.xml -prospr-6dpf-1-whole-AllCR1-MED ../images/prospr-6dpf-1-whole-AllCR1-MED.xml -prospr-6dpf-1-whole-AllCR2-MED ../images/prospr-6dpf-1-whole-AllCR2-MED.xml -prospr-6dpf-1-whole-Arx-MED ../images/prospr-6dpf-1-whole-Arx-MED.xml -prospr-6dpf-1-whole-Ash-MED ../images/prospr-6dpf-1-whole-Ash-MED.xml -prospr-6dpf-1-whole-BAIAP-MED ../images/prospr-6dpf-1-whole-BAIAP-MED.xml -prospr-6dpf-1-whole-BarH1-MED ../images/prospr-6dpf-1-whole-BarH1-MED.xml -prospr-6dpf-1-whole-Beta3-MED ../images/prospr-6dpf-1-whole-Beta3-MED.xml -prospr-6dpf-1-whole-Bmpr1-MED ../images/prospr-6dpf-1-whole-Bmpr1-MED.xml -prospr-6dpf-1-whole-Brn3a-MED ../images/prospr-6dpf-1-whole-Brn3a-MED.xml -prospr-6dpf-1-whole-COE-MED ../images/prospr-6dpf-1-whole-COE-MED.xml -prospr-6dpf-1-whole-Cal2-MED ../images/prospr-6dpf-1-whole-Cal2-MED.xml -prospr-6dpf-1-whole-Calmodulin-MED ../images/prospr-6dpf-1-whole-Calmodulin-MED.xml -prospr-6dpf-1-whole-ChAT-MED ../images/prospr-6dpf-1-whole-ChAT-MED.xml -prospr-6dpf-1-whole-Chx10-MED ../images/prospr-6dpf-1-whole-Chx10-MED.xml -prospr-6dpf-1-whole-Dach-MED ../images/prospr-6dpf-1-whole-Dach-MED.xml -prospr-6dpf-1-whole-DbhLike-MED ../images/prospr-6dpf-1-whole-DbhLike-MED.xml -prospr-6dpf-1-whole-DopaRD2-MED ../images/prospr-6dpf-1-whole-DopaRD2-MED.xml -prospr-6dpf-1-whole-ENR1-MED ../images/prospr-6dpf-1-whole-ENR1-MED.xml -prospr-6dpf-1-whole-ENR10-MED ../images/prospr-6dpf-1-whole-ENR10-MED.xml -prospr-6dpf-1-whole-ENR12-MED ../images/prospr-6dpf-1-whole-ENR12-MED.xml -prospr-6dpf-1-whole-ENR13-MED ../images/prospr-6dpf-1-whole-ENR13-MED.xml -prospr-6dpf-1-whole-ENR16-MED ../images/prospr-6dpf-1-whole-ENR16-MED.xml -prospr-6dpf-1-whole-ENR19-MED ../images/prospr-6dpf-1-whole-ENR19-MED.xml -prospr-6dpf-1-whole-ENR2-MED ../images/prospr-6dpf-1-whole-ENR2-MED.xml -prospr-6dpf-1-whole-ENR20-MED ../images/prospr-6dpf-1-whole-ENR20-MED.xml -prospr-6dpf-1-whole-ENR22-MED ../images/prospr-6dpf-1-whole-ENR22-MED.xml -prospr-6dpf-1-whole-ENR25-MED ../images/prospr-6dpf-1-whole-ENR25-MED.xml -prospr-6dpf-1-whole-ENR29-MED ../images/prospr-6dpf-1-whole-ENR29-MED.xml -prospr-6dpf-1-whole-ENR3-MED ../images/prospr-6dpf-1-whole-ENR3-MED.xml -prospr-6dpf-1-whole-ENR30-MED ../images/prospr-6dpf-1-whole-ENR30-MED.xml -prospr-6dpf-1-whole-ENR31-MED ../images/prospr-6dpf-1-whole-ENR31-MED.xml -prospr-6dpf-1-whole-ENR32-MED ../images/prospr-6dpf-1-whole-ENR32-MED.xml -prospr-6dpf-1-whole-ENR34-MED ../images/prospr-6dpf-1-whole-ENR34-MED.xml -prospr-6dpf-1-whole-ENR39-MED ../images/prospr-6dpf-1-whole-ENR39-MED.xml -prospr-6dpf-1-whole-ENR4-MED ../images/prospr-6dpf-1-whole-ENR4-MED.xml -prospr-6dpf-1-whole-ENR46-MED ../images/prospr-6dpf-1-whole-ENR46-MED.xml -prospr-6dpf-1-whole-ENR6-MED ../images/prospr-6dpf-1-whole-ENR6-MED.xml -prospr-6dpf-1-whole-ENR54-MED ../images/prospr-6dpf-1-whole-ENR54-MED.xml -prospr-6dpf-1-whole-ENR57-MED ../images/prospr-6dpf-1-whole-ENR57-MED.xml -prospr-6dpf-1-whole-ENR62-MED ../images/prospr-6dpf-1-whole-ENR62-MED.xml -prospr-6dpf-1-whole-ENR64-MED 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b/data/0.2.0/misc/dynamic_segmentations.json new file mode 100644 index 0000000..bea02b5 --- /dev/null +++ b/data/0.2.0/misc/dynamic_segmentations.json @@ -0,0 +1,29 @@ +{ + "sbem-6dpf-1-whole-segmented-cells": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/proofread_cells" + ], + "Postprocess": { + "BoundaryKey": "volumes/affinities/s1", + "BoundaryPath": "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "LabelSegmentation": false, + "MaxSegmentNumber": 32700 + }, + "TableUpdateFunction": "make_cell_tables" + }, + "sbem-6dpf-1-whole-segmented-cilia": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/proofread_cilia" + ], + "TableUpdateFunction": "make_cilia_tables" + }, + "sbem-6dpf-1-whole-segmented-nuclei": { + "PainteraProject:": [ + "/g/kreshuk/data/arendt/platyneris_v1/data.n5", + "volumes/paintera/nuclei" + ], + "TableUpdateFunction": "make_nuclei_tables" + } +} \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv deleted file mode 120000 index dd00183..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells-labels/cells_to_nuclei.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv deleted file mode 120000 index 6ab8dc8..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells-labels/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv deleted file mode 120000 index d3af92e..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells-labels/genes.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv deleted file mode 120000 index e0fc9ab..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells-labels/morphology.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv deleted file mode 120000 index 704d192..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells-labels/regions.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/additional_tables.txt b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/additional_tables.txt similarity index 100% rename from data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells-labels/additional_tables.txt rename to data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/additional_tables.txt diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/cells_to_nuclei.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/cells_to_nuclei.csv new file mode 120000 index 0000000..a95947e --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/cells_to_nuclei.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells/cells_to_nuclei.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/default.csv new file mode 120000 index 0000000..78176f5 --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/default.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/genes.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/genes.csv new file mode 120000 index 0000000..ddbc4b6 --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/genes.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells/genes.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/morphology.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/morphology.csv new file mode 120000 index 0000000..0208a83 --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/morphology.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells/morphology.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/regions.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/regions.csv new file mode 120000 index 0000000..c76dce6 --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cells/regions.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cells/regions.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv deleted file mode 120000 index 1d04adc..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../rawdata/tables/sbem-6dpf-1-whole-segmented-chromatin-labels/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv new file mode 120000 index 0000000..f8918e0 --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv @@ -0,0 +1 @@ +../../../rawdata/tables/sbem-6dpf-1-whole-segmented-chromatin/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv deleted file mode 120000 index a259bc1..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cilia-labels/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv new file mode 120000 index 0000000..e157956 --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-cilia/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv deleted file mode 120000 index f944e95..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv deleted file mode 120000 index 1d1e90b..0000000 --- a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv +++ /dev/null @@ -1 +0,0 @@ -../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/morphology.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/additional_tables.txt b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/additional_tables.txt similarity index 100% rename from data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei-labels/additional_tables.txt rename to data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/additional_tables.txt diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv new file mode 120000 index 0000000..d2ff6fc --- /dev/null +++ b/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv @@ -0,0 +1 @@ +../../../0.1.1/tables/sbem-6dpf-1-whole-segmented-nuclei/default.csv \ No newline at end of file diff --git a/data/0.2.0/tables/sbem-6dpf-1-whole-segmented-nuclei/morphology.csv 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