From 8e478a6af6fe0c8f40aa5d01a75f3235a7235294 Mon Sep 17 00:00:00 2001
From: Kimberly Meechan <kimberly.meechan@embl.de>
Date: Thu, 30 Jan 2020 13:31:45 +0100
Subject: [PATCH] update comments
---
scripts/extension/attributes/morphology_impl.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/scripts/extension/attributes/morphology_impl.py b/scripts/extension/attributes/morphology_impl.py
index acf192d..1ef098a 100644
--- a/scripts/extension/attributes/morphology_impl.py
+++ b/scripts/extension/attributes/morphology_impl.py
@@ -260,6 +260,7 @@ def radial_distribution(edt, mask, stops=(0.0, 0.25, 0.5, 0.75, 1.0)):
radial_masks = [np.logical_and(edt > b, edt <= t) for b, t in zip(bottoms, tops)]
for m in radial_masks:
+ # percent of that zone that is covered by the mask
result += (np.sum(mask[m]) / np.sum(m),)
return result
@@ -270,7 +271,7 @@ def chromatin_row_features(chromatin, edt, raw, scale_chromatin):
result += morphology_row_features(chromatin, scale_chromatin)
- # edt stats, dropping the total value
+ # edt stats i.e. stats on distribution of chromatin, dropping the total value
result += intensity_row_features(edt, chromatin)[:-1]
result += radial_distribution(edt, chromatin)
--
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